Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0180 ATGGAGGACGACAATAAGGCGGGAACAGCTGAGAGCCTCATCGATTTGGTCAATCAAATATCTTCCATCTCCGATTACAGGCCAACGGTCAAGAAGGAGTACTGCAACTTGGCCAGGAGGCTCAAGCTCCTCACACCATTGTTCGAAGAGATTAGGGACAGTAAGGACCCTCTCCCTCAACAAACTTCAAATGCTTTGCTTCAGCTTAAGGAAGCCATGGAATCCGCCATGGACCTCCTCAGATTCGGTAGTGAAGGCAGCAAGATTTACATGGTCATTGAGAGGGACCAAATTATTAATAAATTCCACGAGGTGACTACTCAGTTGGAACAAGCATTGGCTGGAATTTCCTATGATAAGCTTGACATTTCAGATGAAGTTACGGAACAGGTTGAGCTTGTTCTTGCACAATTTAGAAGAGCCAAAGGAAGGGTTGATCCAGCTGATGCCGAGTTGCATGAGGATCTCTTGTCCCTTTACAACAAGAGCAATGATGCAGCTACAGATCAAGCTGTTCTACGGAGATTAGCCGAAAAATTGCAACTGATTGGAATAGCTGATCTCACACAAGAGTCGCTAGCTTTGCACGAGATGGTGATCGCGAGTGATGGGGATCCAGGGGCAAGCATTGAGAAGATGTCAATGTTGCTGAAGAGAATAAAGGATTTTGTACTAACAGAGAATCTAGACAAGGATGATAATGTAGGAGGAAACAGCCTTTCTTCAAGTTGCTGCAAACAAGGGACAAATGAAAAGAATCATCAGCCCCCTGTAATCCCTGATGATTTTCGATGCCCAATTTCTCTCGAATTGATGCAGGATCCTGTCATAGTATCAACAGGACAGACTTATGAGCGTTCCTGTATAAAGAAATGGTTGGAAGCAGGACATGGTACATGCCCGAAAACACAGCAGACCTTATCTAGTACTGTTCTCACACCAAACTATGTCTTAAGGAGCCTCATAGCACAATGGTGTGAAGCCAATGGCGTAGAGCCACCAAAGAGACCTAGCAGTTCTCGAACTGATAAATCAGCCTCTGCCTGCTCGCCGGCCGAGCGGAGCAAGATCGAAAATCTTCTTAGGAAGCTCACATCTGGCAATCCTGAAGACCAGAGATCGGCTGCAGGCGAGATTCGCCTTCTTGCAAAGCGCAATGCAGATAATCGCGTGGCCATTGCGGAAGCTGGTGCAATACCTCTTCTTGTTGGTCTTCTCTGTACACCTGATTCCCGCGTTCAAGAGCATGCTGTTACTGCACTTCTGAATCTTTCCATATGTGAAAACAACAAAGGAAGTATTGTGTCTTCAGGGGCAGTACCGGGAATAGTTCATGTGCTCAAGAAGGGAAGCATGGAAGCTCGGGAAAACGCTGCAGCCACACTTTTCAGCCTTTCAGTTATTGATGAAAATAAGGTTACAATCGGTTCTTCAGGGGCCATTCCACCATTAGTTACACTGCTGAGTGAGGGTACCCAAAGGGGTAAGAAAGATGCTGCAACAGCACTCTTCAATTTGTGCATTTACCAAGGGAACAAGGGAAAGGCAGTAAGGGCTGGAGTCGTTCCCACGCTTATGCGACTGCTGACAGAACCTGGCGGGGGAATGGTGGACGAAGCATTAGCCATTTTGGCAATACTAGCTAGCCATCCTGACGGAAAGGCAGCTATTGGCGCTGCCGAGGCGGTGCCTGTATTGGTTGAGGTTATTGGGAATGGATCCCCAAGGAACAAAGAGAATGCAGCTGCTGTATTGGTGCACCTTTGCAATGGAGATCAACAATACATAGCTCAGGCACAGGAGTTAGGTGTGATGGGTCCATTGTTGGAATTGGCTCAACATGGCACAGACAGAGGGAAAAGAAAGGCAGCACAATTGTTAGAGCGTATGAGCAGGTTCCTTGAGCAGCAACATGAGGATGAGGAATTTCAAACACAAACTGAACTATTGCCTTCTATTAATACTACTACTAACCTTGATAGCTGA 1986 0.4653 MEDDNKAGTAESLIDLVNQISSISDYRPTVKKEYCNLARRLKLLTPLFEEIRDSKDPLPQQTSNALLQLKEAMESAMDLLRFGSEGSKIYMVIERDQIINKFHEVTTQLEQALAGISYDKLDISDEVTEQVELVLAQFRRAKGRVDPADAELHEDLLSLYNKSNDAATDQAVLRRLAEKLQLIGIADLTQESLALHEMVIASDGDPGASIEKMSMLLKRIKDFVLTENLDKDDNVGGNSLSSSCCKQGTNEKNHQPPVIPDDFRCPISLELMQDPVIVSTGQTYERSCIKKWLEAGHGTCPKTQQTLSSTVLTPNYVLRSLIAQWCEANGVEPPKRPSSSRTDKSASACSPAERSKIENLLRKLTSGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLCTPDSRVQEHAVTALLNLSICENNKGSIVSSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMRLLTEPGGGMVDEALAILAILASHPDGKAAIGAAEAVPVLVEVIGNGSPRNKENAAAVLVHLCNGDQQYIAQAQELGVMGPLLELAQHGTDRGKRKAAQLLERMSRFLEQQHEDEEFQTQTELLPSINTTTNLDS* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0180 661 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 332 IPR013083 -
Amo18g0180 661 Gene3D - 537 653 IPR011989 -
Amo18g0180 661 Gene3D - 340 536 IPR011989 -
Amo18g0180 661 MobiDBLite consensus disorder prediction 331 353 - -
Amo18g0180 661 SUPERFAMILY ARM repeat 357 637 IPR016024 -
Amo18g0180 661 CDD RING-Ubox_PUB 263 305 IPR045210 -
Amo18g0180 661 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 520 562 IPR000225 GO:0005515
Amo18g0180 661 Pfam U-box domain 259 329 IPR003613 GO:0004842|GO:0016567
Amo18g0180 661 SUPERFAMILY RING/U-box 249 335 - -
Amo18g0180 661 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Amo18g0180 661 Gene3D - 8 119 IPR036537 GO:0007166
Amo18g0180 661 Pfam Armadillo/beta-catenin-like repeat 469 507 IPR000225 GO:0005515
Amo18g0180 661 Pfam Armadillo/beta-catenin-like repeat 386 425 IPR000225 GO:0005515
Amo18g0180 661 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 397 439 IPR000225 GO:0005515
Amo18g0180 661 PANTHER U BOX DOMAIN-CONTAINING 7 646 - -
Amo18g0180 661 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 646 - -
Amo18g0180 661 SMART arm_5 386 426 IPR000225 GO:0005515
Amo18g0180 661 SMART arm_5 427 467 IPR000225 GO:0005515
Amo18g0180 661 SMART arm_5 550 590 IPR000225 GO:0005515
Amo18g0180 661 SMART arm_5 592 632 IPR000225 GO:0005515
Amo18g0180 661 SMART arm_5 509 549 IPR000225 GO:0005515
Amo18g0180 661 SMART arm_5 468 508 IPR000225 GO:0005515
Amo18g0180 661 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0180 Amo-Chr18 2644038 2647885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0180 3 652 U-box Gene Family AT3G46510 70.840 0.0 929
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0180 - - pvu:PHAVU_011G064700g 1031.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0180 18 2644038 2647885 Amo18g0180 18 2644038 2647885 ECH