Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0173 AGTAAGAAATTAAATAAAAAAAAAGAAAATGTGAGCACAGATGGAAATGATCTCAGTAACACAAACAGTAAGGTTTCGTCTACCTCGATGCCACCGACTCCACGGAGTGAGGGAGAGATCTTGCAGTGTTCTAATTTAAAGAGCTTTAGTTTATCAGAACTTAAGACAGCCACGAGAAATTTCCGGCCGGACAGTGTGTTAGGAGAAGGTGGTTTTGGTTCTGTTTTTAAGGGTTGGATGGATGAGAATTCTTTGGTGGCTTCCAAACCTGGCACTGGCATTGTTATTGCTGTGAAGAGACTTAATCAAGATGGCTTACAGGGTCACAGGGAGTGGTTGGCTGAAGTAAACTATCTTGGACAATTTTCTCATCCTCATCTAGTGAGATTGATTGGATACTGCCTTGAAGATGAACATCGCCTTCTCGTCTATGAGTTTATGCCTCGTGGCAGCTTGGAGAATCATTTGTTCAGGAGAGGCTCATACTTTCAACCTCTATCATGGAGTCTCCGTTTAAAGGTTGCTCTTGATGCAGCCAAAGGGCTTGCATTCCTTCACAGTGCCGAAACACAAGTGATTTACCGTGACTTTAAGACTTCCAATGTCTTGCTTGACTCCAATTACAATGCAAAACTTTCGGATTTCGGGCTAGCGAAAGATGGACCAACAGGTGACAAAAGTCATGTGTCAACAAGGGTGATTGGAACCTACGGATATGCAGCTCCTGAATATCTAGCTACTGGTCATCTTACTGCAAAGAGTGATGTCTATAGTTTTGGAGTAGTCCTACTTGAAATGTTATCCGGTAAGAGGTCGGTTGACAAGAATCGACCAACCGGACAACACAGTCTGGTGGAGTGGGCTAAACCATACCTGGCTAATAAACGCAAGGTCTTTCGAGTTTTGGACACGCGCCTCGAAGGACAGTATTCGGTTGAAGATGCCTATAAGGTAGCCACACTCACCTTGAGATGCATATCTAGAGAATCCAAGTTCAGGCCAAACATGGATGAAGTTGTTACATTACTGGAGCAGCTGCAGGCTCCTAATGCAGATGCAGGCAACCGAAATCCTTCTTGTAATGCGTCTCGCCCTCGTAGAAGAAGCGCTGATGATGTTAGCCATAGGAGGGCCACCCCTACAGCTTACCCTAGGCCCTCTTCTTCAACTCTATATACTTGA 1182 0.4459 SKKLNKKKENVSTDGNDLSNTNSKVSSTSMPPTPRSEGEILQCSNLKSFSLSELKTATRNFRPDSVLGEGGFGSVFKGWMDENSLVASKPGTGIVIAVKRLNQDGLQGHREWLAEVNYLGQFSHPHLVRLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALDAAKGLAFLHSAETQVIYRDFKTSNVLLDSNYNAKLSDFGLAKDGPTGDKSHVSTRVIGTYGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGKRSVDKNRPTGQHSLVEWAKPYLANKRKVFRVLDTRLEGQYSVEDAYKVATLTLRCISRESKFRPNMDEVVTLLEQLQAPNADAGNRNPSCNASRPRRRSADDVSHRRATPTAYPRPSSSTLYT* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0173 393 ProSitePatterns Protein kinases ATP-binding region signature. 67 99 IPR017441 GO:0005524
Amo18g0173 393 ProSiteProfiles Protein kinase domain profile. 61 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g0173 393 MobiDBLite consensus disorder prediction 349 393 - -
Amo18g0173 393 CDD STKc_IRAK 67 346 - -
Amo18g0173 393 Gene3D Phosphorylase Kinase; domain 1 37 146 - -
Amo18g0173 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Amo18g0173 393 MobiDBLite consensus disorder prediction 14 38 - -
Amo18g0173 393 Pfam Protein tyrosine and serine/threonine kinase 65 342 IPR001245 GO:0004672|GO:0006468
Amo18g0173 393 SUPERFAMILY Protein kinase-like (PK-like) 39 345 IPR011009 -
Amo18g0173 393 MobiDBLite consensus disorder prediction 1 38 - -
Amo18g0173 393 MobiDBLite consensus disorder prediction 349 364 - -
Amo18g0173 393 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL11-RELATED 15 360 - -
Amo18g0173 393 PANTHER OS01G0588500 PROTEIN-RELATED 15 360 - -
Amo18g0173 393 Gene3D Transferase(Phosphotransferase) domain 1 147 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0173 Amo-Chr18 2576018 2578874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0173 47 343 Glycoside Hydrolase AT3G07070 50.000 1.64e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Amo18g0173 PK_Tyr_Ser-Thr 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0173 - - adu:107461650 762.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0173 18 2576018 2578874 Amo18g0173 18 2576018 2578874 ECH