Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0161 ATGAATGGTTTTCACTATGAGGGTTCATCATATTCACCTGGAACCAGCTCAAGTGAAGATTCTGCTGAGTATAATAAATATTCCAACCCCATCCTCAGATACATAAGTGACATCCTCATGGAGGAGGAAGATGACTTGGAGAACAAACCCTGTATGTTGCAGCAGTGTTTGAAGCTCCAAGCTGCTGAAAAATCATTCTCTGAAGTGCTTGGAAATTCATCAAATTCTATACCCTCTCAAGGCTGTGATGAAAACAACCGAGATGGTGATTATGGTCGGACCACCAGCTTCGAGAGCTATAGCAGCTGCACCACTGATAATAACTCTTATGAGTCTGATTGGGTCAATCTTGTTGGTGAATATGAATCTTCTTTGCTACAAGCCCCTGATAATGACTCTTATGAGTCAGATTGGCTCAATCTTCTTGACTCCCCAAATGATGGATCTTCTGAAATTCACTACCAGAACATGGTGCTACTGACAAACAATGGAGAGGGATCTCGATCTGGAACAACAGGAACAAGGGAAAAGAGAAGTATTCAGGTTGATGATGATACTTCTTATGAACAAGGTCGAAGAGGAAGCAAGATCTCAGCTGTTTTCTCTGATGAGTCAGAGCCACCAGAGATTCTTGATGAAGTGCTGCGTGTTCAGATTGGAAGAAGTCAATGTTTATCTGGTGTTGAACCCTTACCAGAGAATGAGATATCGAAGAGGCAGAATGTTGACTCAGTTGGATCCAGTGGAAAGACGGCAAGATCAAAGAAAGGAAGCAGCAGAAATAGCAACACAGGTGCAACTGTGGATTTATGGAGTCTGCTAACTCGGTGTGCACAAGCAGTGGCAAACTATGATCAGAGGAATGCATATGATACACTCAAGCAGATTAGGCAACATTCTTCACCAGCTGGGGATGGAATGCAGCGTATGGCGCATTACTTCGCCATTGGCCTTGAGACACGGTTGAATGCCGGAACACCTTCATATCTTCCCCTTGATATGGCATCTGCTGCTGATATGTTGAAAGCTCACAAACTATATGTGACAGCTTCTCCTTTGCAGAGGATGACAAATACATTTGCAACCCAAACAATCATGAACCTAGTACAGAATGAAAGCTGTGTTCACATTATTGACTTTGGAATTTGCTATGGTTTCCAGTGGCCCTGCCTTATCAAGCGTCTGTCACAGAGAAATGTGCCTATAAAGCTTCGTATAACCGGAATTGATCTTCCTCAGCCGGGATTCCGGCCGGCAGAAAGGCTCGAGGAGACTGGTAGACGCCTGGAGAATTACTGTAAGAGGCACAATGTGCCTTTCGAATACAACTGCATTGCACAGAAATGGGAAACAATCAGGCTTGAGGATCTTAAAATAGACAGGAATGAAGTGACAGTGGTTAACTGCTTTTACAGGCTGAAAAACCTGCCGGATGAAACTGTGTTAGTAAACAGTCCAAGAGATGCAGTGTTGAAGCTGATCAGGAGCATTAATCCAAACATCTTCCTGCATGGGGTAGTCAATGGCTCTTATAGCGCGCCGTTTTTCCTGACACGGTTCAGGGAGGCACTCTTCCACTTCTCGTCACAATTTGATATATTTGAGGCTAATGTCCCCCGCGAAGATGCAGAAAGGATGATACTTGAGAAAGGGTTGATTGGAAGGGATGCTATCAATGTGATAGCTTGTGAGGGAGCAGAGAGAGTTGAAAGGCCAGAGAGCTACAAGCAATGGCAGATTAGGAACAAGAGAGCAGGCTTCAAGCAAATTCGGGTGGATCAGGAATTGGTGAATGAAATCAAGGGAATGGTGAAGAAAGAGTATCATAGAGATTTTGTGGTTGACCAGGATGGCAAGTGGGTTTTGCAGGGCTGGAAAGGCCGTATTCTTCATGCTCTCTCTGCTTGGGTTCCTGCTTAA 1920 0.4432 MNGFHYEGSSYSPGTSSSEDSAEYNKYSNPILRYISDILMEEEDDLENKPCMLQQCLKLQAAEKSFSEVLGNSSNSIPSQGCDENNRDGDYGRTTSFESYSSCTTDNNSYESDWVNLVGEYESSLLQAPDNDSYESDWLNLLDSPNDGSSEIHYQNMVLLTNNGEGSRSGTTGTREKRSIQVDDDTSYEQGRRGSKISAVFSDESEPPEILDEVLRVQIGRSQCLSGVEPLPENEISKRQNVDSVGSSGKTARSKKGSSRNSNTGATVDLWSLLTRCAQAVANYDQRNAYDTLKQIRQHSSPAGDGMQRMAHYFAIGLETRLNAGTPSYLPLDMASAADMLKAHKLYVTASPLQRMTNTFATQTIMNLVQNESCVHIIDFGICYGFQWPCLIKRLSQRNVPIKLRITGIDLPQPGFRPAERLEETGRRLENYCKRHNVPFEYNCIAQKWETIRLEDLKIDRNEVTVVNCFYRLKNLPDETVLVNSPRDAVLKLIRSINPNIFLHGVVNGSYSAPFFLTRFREALFHFSSQFDIFEANVPREDAERMILEKGLIGRDAINVIACEGAERVERPESYKQWQIRNKRAGFKQIRVDQELVNEIKGMVKKEYHRDFVVDQDGKWVLQGWKGRILHALSAWVPA* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0161 639 MobiDBLite consensus disorder prediction 177 191 - -
Amo18g0161 639 MobiDBLite consensus disorder prediction 237 263 - -
Amo18g0161 639 MobiDBLite consensus disorder prediction 162 194 - -
Amo18g0161 639 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 638 IPR005202 -
Amo18g0161 639 MobiDBLite consensus disorder prediction 228 263 - -
Amo18g0161 639 ProSiteProfiles GRAS family profile. 261 637 IPR005202 -
Amo18g0161 639 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 2 638 - -
Amo18g0161 639 MobiDBLite consensus disorder prediction 162 176 - -
Amo18g0161 639 MobiDBLite consensus disorder prediction 1 23 - -
Amo18g0161 639 Pfam GRAS domain family 272 636 IPR005202 -
Amo18g0161 639 MobiDBLite consensus disorder prediction 70 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0161 Amo-Chr18 2478795 2481138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0161 31 71 GRAS Transcription Factor Family AT1G07530 60.976 8.85e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo18g0161 GRAS 1.8e-104 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0161 - - aip:107612146 1263.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0161 18 2478795 2481138 Amo18g0161 18 2478795 2481138 ECH