Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0152 ATGCCTCCTCCATTTGATATGATTTCCAAGATGCATCCTCCTAGAGAGACTTGGAGGCTGAAAGTTAGGGTTCTAAAGCTTTGGGTTGTACCCTCTTTTGGTAACCATGAGGTTCCTAACACAATGGAGATTATTCTCCTTGATGAGCATTGTGGAAAAATTCAAGCTACAATTAAGAAACCACTCCTTAATAGGTTTAGGGATCATATAGTTGAAGGTCAAGTTTATAGAATGACATACTTTATTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTCCTTCACCGAACCACTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGTTGTGTTTATTTGGAATAGATGTCATTGGTCTTTTAACTTCAGTGGGAGAAGAGAAAGAATATGCAAAAGAGGGGAAAATTGTGAAAATGATTGTGCTGGAATTAACTTCAAAAGATCTTACAGTGCGCTGTGCATTATTTGGGGACTATGTTAATCAAGTAAATCATTTCCTTGCCTCTGGCTATGTGGAGCAGCCTGTTGTGTTGTCTCTAATAAAGTTTGCTAGACTCTTTCTGTGTTGCTGTGTAGGTCAAGTAGGCCTTCAAAATGTGATGTATGCCACTCAAATGTTATTTAATCCTGATCTTCCTGAAGTTGTTGAATTCAGGCAGAGATTAGCATGTATGGTTGAGCAAAGTGTCAATGATACCCAGCCACTGTTTATTGCAAATGAGGGTAAAGTTGTCTCCTTGGAAGATGATTTCATGCGTTTAACTAGAAAATGCACTATTGAAGAGCTTCAAGATAACAATGAGCTTGTATGTGGGGATACTTATCCTCCCATATTCCAAGGGCTCATTGGAAAGAAATTATTGCTGAAGGTTGATACCAAAGGTGTGCCACATGATGCATTTTATGACACTTTCCGAGTTAGGAGAATATGTGATGATCCCACCATTATTACCATGTTTGAGCTTCTGGATTATGATGCTGATGATGAGTCTACTCCAAAAAAGGAGCCTGATTTACACAAATCTGTTCCCTGTGGAGAAGGGGATATTGGTATTAAGAATGAGTCATCAAAGAATTTTATCAAAAGTGAGAAAGTTGCTGGGACTGATTTTGCTTCCTTAATTAATGGTGAACATGGAAAAGATGAGAAAACACCCAGCAATGATACTGTTAGTGATGATCTTTCTGCTGAACTGGATATATTGCTTAGCTCACCAGAAAAAGAAACTCATATGCTGTTATATAATGAGGTATTGTCCCACGTTATTGATGCACCTTCCCAATATGGAGAGAAGCTTATTCATGAAAATCATGTTGTCACCACCAAAGGCAAGAGAAATCTGAATCCACAATTTGAAGAGGCGGCTGCTGATGCAGATGGGCGTGGGTTCAAGAATGCCAAGGTTAATGGAGTTTGA 1458 0.3848 MPPPFDMISKMHPPRETWRLKVRVLKLWVVPSFGNHEVPNTMEIILLDEHCGKIQATIKKPLLNRFRDHIVEGQVYRMTYFIVVSNHGSYRATSHEFKLVFLHRTTVVAVDEDVIPKTCFNMLCLFGIDVIGLLTSVGEEKEYAKEGKIVKMIVLELTSKDLTVRCALFGDYVNQVNHFLASGYVEQPVVLSLIKFARLFLCCCVGQVGLQNVMYATQMLFNPDLPEVVEFRQRLACMVEQSVNDTQPLFIANEGKVVSLEDDFMRLTRKCTIEELQDNNELVCGDTYPPIFQGLIGKKLLLKVDTKGVPHDAFYDTFRVRRICDDPTIITMFELLDYDADDESTPKKEPDLHKSVPCGEGDIGIKNESSKNFIKSEKVAGTDFASLINGEHGKDEKTPSNDTVSDDLSAELDILLSSPEKETHMLLYNEVLSHVIDAPSQYGEKLIHENHVVTTKGKRNLNPQFEEAAADADGRGFKNAKVNGV* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0152 485 Gene3D - 113 242 IPR012340 -
Amo18g0152 485 Gene3D - 4 112 IPR012340 -
Amo18g0152 485 CDD RPA1_DBD_B_like 129 235 - -
Amo18g0152 485 PANTHER REPLICATION FACTOR A 1, RFA1 22 281 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo18g0152 485 CDD RPA1_DBD_A_like 19 107 - -
Amo18g0152 485 SUPERFAMILY Nucleic acid-binding proteins 128 235 IPR012340 -
Amo18g0152 485 SUPERFAMILY Nucleic acid-binding proteins 3 112 IPR012340 -
Amo18g0152 485 Pfam Domain of unknown function DUF223 43 112 IPR003871 -
Amo18g0152 485 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0152 Amo-Chr18 2422920 2425790 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0152 2 233 Core DNA Replication Machinery Family AT5G45400 24.303 3.80e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0152 - - adu:110280586 540.036