Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0149 ATGAGTTTTGTTTTCAGAGGGAGTAGGGAAGATATTGAAAGTGGTTTTCCAGATTATGTTCCTGAAAGATCCTTGATGCGTATTCATCCGGCTCGACCAATTAGTAGCAATTCTCTGGCTTTTCTTACCACAGTTATTGTGTTATTCATGCTGCTGAACTCTCCTCAGATGGCACATTATTTTATGCTATGGCTTGTGCTTGCTGTTTTTGCGATGGCTACAAGCTTGAGGATGTACACAGCTTGTCAGCATCTTCAAGCTCAGGCCAGGGCTCATGCAGCAGCAGCAACTGGATTGCTTAGCCATACCGAATTATGGCTTAATGTGCCACCATCCATAGCAATTGCAACTAGAGGACAATTGCAGGGGCTTAGGCTTCAGCTTGCACTACTTGATCGTGAATTCGATGAACTAGATTATGATGCTTTGAGAGCTCTTGACTCTGATACTGCTTCGACTACTACTTCCATGACTGAGGAAGAGATAAACGCCTTACCTGTTCACAACTATAAAGTTGCAGTTCCAACAAAGGATTGCTCAGCAGGGTTGGGATCCTCTTCGGGTGCTGCTGAGAATAAGCAAGCCTGCGAAGGAGCCGAGGGAAATAACCAAGGCCCGGAAGATGAGCTAACATGTACCATATGCTTGGACCAAGTTAACCGTGGCGAACTAGTCCGTAGCCTGCCATGCTTGCATCAGTTTCATGCCAACTGCATTGATCCATGGCTCCGGCAGCGAGGAACATGTCCGGTGTGCAAATTTAAGATGGGTTCGGAATGGCGAGGAAACAGGGAGACCGAGACTGATTCCGACGGTTCAGATATTGCTTAG 831 0.4657 MSFVFRGSREDIESGFPDYVPERSLMRIHPARPISSNSLAFLTTVIVLFMLLNSPQMAHYFMLWLVLAVFAMATSLRMYTACQHLQAQARAHAAAATGLLSHTELWLNVPPSIAIATRGQLQGLRLQLALLDREFDELDYDALRALDSDTASTTTSMTEEEINALPVHNYKVAVPTKDCSAGLGSSSGAAENKQACEGAEGNNQGPEDELTCTICLDQVNRGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFKMGSEWRGNRETETDSDGSDIA* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0149 276 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 274 - -
Amo18g0149 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 259 IPR013083 -
Amo18g0149 276 ProSiteProfiles Zinc finger RING-type profile. 212 253 IPR001841 -
Amo18g0149 276 SMART ring_2 212 252 IPR001841 -
Amo18g0149 276 Pfam Ring finger domain 211 253 IPR001841 -
Amo18g0149 276 CDD RING-H2_PA-TM-RING 211 253 - -
Amo18g0149 276 PANTHER TARGET OF ERK KINASE MPK-1 1 274 - -
Amo18g0149 276 SUPERFAMILY RING/U-box 207 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0149 Amo-Chr18 2380818 2383664 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0149 1 276 C3H Transcription Factor Family AT3G55530 66.187 4.36e-121 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0149 K16283 - gmx:100805406 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0149 18 2380818 2383664 Amo18g0149 18 2380818 2383664 ECH