Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0146 ATGAACTCGGATATAACTCACGCCACGACGGCGTCGTATTGGTGCTACAGCTGTACACGTTTCGTTCACCTTCTCGACCGACACGACGTCGTTTGCCCCCACTGCCAAAGCGGTTTCGTTGAAGAGATCCATGCCGGCCAGTCCCCTGCCATGTCTCTCTTCGCCGACGGTCTTCAAGCATCTCGCCGCCAAGGCTTCCGCCGGAGGCGCCGAAACGCTGGCAGCCGCTCGCCGTTTAACCCGGTTATCGTTCTCCGTGGACCAGGGGAGGATGGCGCTGCCGGAGGCGATAACGAGGGTTCCACTTTCGAGTTGTACTATGACGACGGCGATGGTTCCGGTCTTCGTCCTCTGCCGCCGACGATGTCAGAGTTTTTGCTCGGATCTGGATTCGATAGGTTACTAGAGCAGTTCTCTCAGATCGAGATCAACGGATTTGGTCGGCCGGAGAATCCGCCGGCATCGAAGGCGGCGATAGAGTCAATGCCAACGGTTGAGATCGGAGGCTCTCACGTGGAGACGGAAACTTACTGCGCCGTGTGCAAGGAAGCCTTTGAGCTCGGTGCGGAGGCGCGTGAGATGCCGTGTAAACACCTATACCACTCCGATTGCATCATGCCGTGGCTCACGATGCGGAATTCGTGCCCTGTGTGCCGCCACGAGCTGCCGTCCGATCAGAACGCGGCGGAAGGGAGAGTCGCCGGTCAGATCGATGAGGAAGCGGTAGGGTTGACCATATGGAGGTTGCCGGGAGGCGGTTTCGCCGTCGGAAGATTCTCCGGCGGCCGAAGATCCGGCGAGAACCGTTTGCCCGTCGTGTATACCGAGATGGACGGCGGAGGCAGCGGTGGAAGCAATGGAGGAAACTCGAACGGTGGTTCTAGAAGAATATCCCGCGCAGTTGGAAGCAGTAGGGTTAGGGAGAATCGCGGAATTGGAAGAATTTTCCGCAATTTCTTTTCCTTCTTCGGGAGAATTGGATCTAGGTCACGTTCCTCTTCGTCATCGTCGTATTCAGGTTCTGAGCATGGATCAGTGAGTAGAAGTCACAGCTATTCAAAACTGGCTACTGCTGTAGAAGGAGGGGAGTTTGCTGGTGATGAAGTGAACGCAGTTTAG 1119 0.5657 MNSDITHATTASYWCYSCTRFVHLLDRHDVVCPHCQSGFVEEIHAGQSPAMSLFADGLQASRRQGFRRRRRNAGSRSPFNPVIVLRGPGEDGAAGGDNEGSTFELYYDDGDGSGLRPLPPTMSEFLLGSGFDRLLEQFSQIEINGFGRPENPPASKAAIESMPTVEIGGSHVETETYCAVCKEAFELGAEAREMPCKHLYHSDCIMPWLTMRNSCPVCRHELPSDQNAAEGRVAGQIDEEAVGLTIWRLPGGGFAVGRFSGGRRSGENRLPVVYTEMDGGGSGGSNGGNSNGGSRRISRAVGSSRVRENRGIGRIFRNFFSFFGRIGSRSRSSSSSSYSGSEHGSVSRSHSYSKLATAVEGGEFAGDEVNAV* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0146 372 MobiDBLite consensus disorder prediction 273 304 - -
Amo18g0146 372 Pfam zinc-ribbon 12 43 IPR039525 GO:0061630
Amo18g0146 372 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Amo18g0146 372 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 311 - -
Amo18g0146 372 SMART ring_2 178 218 IPR001841 -
Amo18g0146 372 PANTHER OS05G0110000 PROTEIN 8 311 - -
Amo18g0146 372 MobiDBLite consensus disorder prediction 67 95 - -
Amo18g0146 372 MobiDBLite consensus disorder prediction 282 298 - -
Amo18g0146 372 Pfam Protein of unknown function (DUF1117) 242 353 IPR010543 -
Amo18g0146 372 SUPERFAMILY RING/U-box 158 225 - -
Amo18g0146 372 MobiDBLite consensus disorder prediction 327 352 - -
Amo18g0146 372 CDD RING-H2_RNF126_like 178 219 - -
Amo18g0146 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 225 IPR013083 -
Amo18g0146 372 Pfam Ring finger domain 177 219 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0146 Amo-Chr18 2325485 2328337 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0146 117 230 C3H Transcription Factor Family AT5G01980 43.860 2.51e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0146 - - aip:107612938 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0146 18 2325485 2328337 Amo18g0146 18 2325485 2328337 ECH
Amo18g0146 18 2325485 2328337 Amo13g0482 13 6243447 6245786 ECH
Amo18g0146 18 2325485 2328337 Amo13g0482 13 6243447 6245786 PCT
Amo13g0482 13 6243447 6245786 Amo18g0146 18 2325485 2328337 PCT