Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0142 ATGGGAGAAGAGGTTAAGATCGCCGACTACCCAGGCGGCGGCGCCGACGACGAGCGCGTTTCCGAGTGGGAGCTTGGCCTCCCCTCTCCCGCCGACCTTCCGCCTCTCTCTCAGGCCCTGATCCCGCCGGAGCTTGCCTCCGCCTTCAGCATCTCCCCGGAGCCCTACCGGACTCTTCTCGACGTCAACCGCGCCTCGCAGGACACCATCTCCGCAATTCGCGGCGGCGCCTCCCAGGCCTTCTCCTCCAGCAATTTCCAACTCGATGACCGCGCCACCGTGTTTGAGCCCGACGCCACGGCGTTTGCCGATGAGGAATTAGAGCCCGATCGAGATGGCTCCGGCTCTGATTCCAGGAAGCTCCGGAAGATCGACAGCGCCGCCGAGGAGGCCGATTCGGCAGCGCCACCGGCCAACGACGATCCTTCCGCCCGGTCAATGAAGCGGCCGCGCCTCGTGTGGACGCCTCAGCTTCACAAGCGCTTCGTAGACGTGGTAGCGCACCTCGGAATCAAGAACGCGGTTCCGAAGACGATTATGCAGCTAATGAACGTAGAAGGATTGACTCGCGAGAACGTTGCGAGCCACCTTCAGAAATATCGCCTTTACTTGAAGCGAATGCAAGGGTTGTCCAACGAAGGTCCTTCTTCTTCTGATCAGTTGTTCGCGTCGACTCCTGTGCCGCAGAGCTTGCACGAGTCCGGCGGTGCTGGCGGAAGCGCGGGGCATTCCCATGGAAACGGACACCTTCCGGTTCCAATTCCGTTGCCGTATCCAGCTCCTCCGGCGATGATGCCAATGCCGATGCTCGGGATGCCTCCGATGGGTATGGCCGTAGGGAACCACCACGGATTCAACCCGTTGGCGCAGCAACGGGATTGGTCCGGTGCGAATAAATTTGGTTCCGTTGTTTCGTACCCTCAGAGTCACAGTCAGGGCGTCACTCCTAGTGATAAATGA 960 0.6062 MGEEVKIADYPGGGADDERVSEWELGLPSPADLPPLSQALIPPELASAFSISPEPYRTLLDVNRASQDTISAIRGGASQAFSSSNFQLDDRATVFEPDATAFADEELEPDRDGSGSDSRKLRKIDSAAEEADSAAPPANDDPSARSMKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDQLFASTPVPQSLHESGGAGGSAGHSHGNGHLPVPIPLPYPAPPAMMPMPMLGMPPMGMAVGNHHGFNPLAQQRDWSGANKFGSVVSYPQSHSQGVTPSDK* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0142 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 146 205 IPR017930 -
Amo18g0142 319 Pfam Myb-like DNA-binding domain 153 201 IPR001005 -
Amo18g0142 319 SUPERFAMILY Homeodomain-like 147 206 IPR009057 -
Amo18g0142 319 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 150 202 IPR006447 GO:0003677
Amo18g0142 319 MobiDBLite consensus disorder prediction 100 146 - -
Amo18g0142 319 MobiDBLite consensus disorder prediction 104 129 - -
Amo18g0142 319 MobiDBLite consensus disorder prediction 299 319 - -
Amo18g0142 319 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 311 - -
Amo18g0142 319 MobiDBLite consensus disorder prediction 210 231 - -
Amo18g0142 319 MobiDBLite consensus disorder prediction 210 248 - -
Amo18g0142 319 Gene3D - 146 208 - -
Amo18g0142 319 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 311 IPR044841 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0142 Amo-Chr18 2293717 2296150 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0142 1 302 G2-like Transcription Factor Family AT3G46640 53.870 4.05e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo18g0142 Myb_DNA-binding 1.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0142 - - zju:107411020 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0142 18 2293717 2296150 Amo18g0142 18 2293717 2296150 ECH