Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0141 ATGATAGATTTTTTGGATAAGCTGATTAACATGCATGGATGTGGATTGACTAGGTCTCTTCCTCTTCCTCCTCCTTTGACTGCACCCAACAACTTCCTTTCTCAAATTAGCACACAACTATGCTTGAGATCCCTTCTTTCCATCCAGACCCAAAACCCGTCACTTTCTTTCATACCCACTTCTAAATATAGATATACAGGTGCTTTCAGCTACGGGAATCATGGGATTCGTAACAATGGAGGAAGACGTGGCAACAGACCAGTGGCTATGAGAGCAAGCCGCGGAGAATCTCCGTACGAGATTCTGGGAGTGTCCCCATCCGCAACTTCCGACGAAATCAAAAGGGCCTATAGGAAACTTGCCCTCAAGTATCACCCTGATGTTAACAAAGAGGATAAGGCGCAGGAGAAGTTTATGAGGATAAAGCATGCATACAATACCCTGATAAATTCTAATTCCCGCAGAAAATATGATTTTGGAAATCGTGGTTCTGATTTTTCATATTCCTCTTCTCAAAGAAGCCAAAGTAGGAGCACACAAGAAGAAGAATTTTATGGATTAGGTAATTTTTTCAGGGATGTTCAAATAACAATAGAGGACTTTTTTAAAGATCTTCAAGAAGAATTCAAGAACTGGGAAGCTAATGCTGCTTCAGAGGGAAAGCCAAAGAGCCTATGGGAGGAAATAGCGGAAATAGGAGAAGAATTTGTGGAGTTTCTTGAGAAAGAACTCAATATTGTTGATACAGAAGCTGATCAAAATAACAATGAAACAACTCAGGGTGGAAATAAATCTAACATGTCTGGGACAGGCACACCGGATAATGAAGCTGGCAAAGGAAAAACAAGCATTGAAGATAACCTTGATGATGTAGAAGCCACTCTGGCCAAGTTAAAGAAGGAACTAGGCTTATAG 915 0.4087 MIDFLDKLINMHGCGLTRSLPLPPPLTAPNNFLSQISTQLCLRSLLSIQTQNPSLSFIPTSKYRYTGAFSYGNHGIRNNGGRRGNRPVAMRASRGESPYEILGVSPSATSDEIKRAYRKLALKYHPDVNKEDKAQEKFMRIKHAYNTLINSNSRRKYDFGNRGSDFSYSSSQRSQSRSTQEEEFYGLGNFFRDVQITIEDFFKDLQEEFKNWEANAASEGKPKSLWEEIAEIGEEFVEFLEKELNIVDTEADQNNNETTQGGNKSNMSGTGTPDNEAGKGKTSIEDNLDDVEATLAKLKKELGL* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0141 304 MobiDBLite consensus disorder prediction 249 277 - -
Amo18g0141 304 Gene3D DnaJ domain 95 216 IPR036869 -
Amo18g0141 304 CDD DnaJ 98 150 IPR001623 -
Amo18g0141 304 PRINTS DnaJ domain signature 133 153 IPR001623 -
Amo18g0141 304 PRINTS DnaJ domain signature 117 132 IPR001623 -
Amo18g0141 304 PRINTS DnaJ domain signature 99 117 IPR001623 -
Amo18g0141 304 SMART dnaj_3 96 153 IPR001623 -
Amo18g0141 304 ProSiteProfiles dnaJ domain profile. 97 161 IPR001623 -
Amo18g0141 304 SUPERFAMILY Chaperone J-domain 62 157 IPR036869 -
Amo18g0141 304 Coils Coil 281 301 - -
Amo18g0141 304 Coils Coil 237 257 - -
Amo18g0141 304 Pfam DnaJ domain 98 158 IPR001623 -
Amo18g0141 304 ProSitePatterns Nt-dnaJ domain signature. 138 157 IPR018253 -
Amo18g0141 304 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 86 302 - -
Amo18g0141 304 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 86 302 - -
Amo18g0141 304 MobiDBLite consensus disorder prediction 248 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0141 Amo-Chr18 2288929 2290840 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0141 99 158 C2H2 Transcription Factor Family AT1G74250 39.394 1.91e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0141 - - adu:107461539 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0141 18 2288929 2290840 Amo18g0141 18 2288929 2290840 ECH