Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0119 ATGGGCGCGCGCACCGTCACGGTGCTAAACGTGGCGGAGAAGCCGTCGGTGGCGCGGTCCGTCTCCACCATCTTGTCACGGAATCAGGGCATTCGAATGAGGGAAGGTCGCTCCCGCTACAACAAGATCTTCGAGTTTTCTTACTCCATTCGCGGCCAATCCTGCCACATGCTCTTCACCTCCGTCACCGGCCACCTCATGGAGCTCGAGTTCGACGAACGCTTTCGCAAGTGGCACTCCTGCGACCCCGCCGATCTCTACCACGCTCCTGTCCGAAAATCCGTTCCTGAGGACAAGAAGGATATCAAGAGGACGCTGGAGGAGGAAGCCAGGAGGTGTCAGTGGCTTGTTCTGTGGCTTGATTGTGATAGAGAGGGTGAAAACATTGCATTTGAGGTGGTTGATGTTTGCACCATGGCAAACCAGAATCTTACTATAAAGAGGGCTCGATTTTCTGCGTTGATTGATAGGGAAATTCATCAGGCAGTACAGAATCTGGTTGAGCCAAATAAGTGGTTTGCAGATGCTGTGGATGCTAGGCAAGAAATTGATCTTCGTATTGGTGCTTCTTTCACCAGATTTCAGACCATGTTAATGAAAGATGCTTTTATAATTGACACTGCTTCTGGTGACAGAAATCTTGTCTTAAGTTATGGCCCTTGCCAGTTTCCTACACTTGGATTTGTTGTAGAAAGATATTGGGAGATACAAGCACATGAGCCAGAAGAGTTTTGGACAATCAATTGTTCTCATAGATCAGATGAAGGTCTTGCTAATTTCAACTGGATGCGGGGTCATTTGTTTGATTATACTTGTGCAGTAGTAATATACGAGATGTGCATTGAGGAACCAACTGCAACTGTCACAGATGTTAAACAACAAGAGAAATTGAAGTATCCTCCTCATCCTCTGAATACCATTGAGCTTGAGAAACGTGCTTCACGATATTTTCGAATGAGTTCTGAGCACACGATGAAGGTGGCAGAAGAGCTTTACCAAGCTGGTTTCATCAGTTATCCTCGTACAGAAACTGATAGTTTTTCTTCAAGGACTGATTTGCATACAATTGTGCAAGAACAACAAGCGCATCCTGAATGGGGAACATATGCACAACGGTTGTTGGACCCTGAGACAGGACTTTGGAGAAATCCTCGTGGTGGTGGACATGATGACAAGGCCCATCCTCCCATTCACCCTACAAAGTTTTCTAGTGGAGAATCCAATTGGAGCCAAGACCACCATAAATTGTATGAGCTGGTTGTTCGCCACTTCTTGGCTTGTGTCTCAAAGCCTGCTGTAGGGGCTGAAACCACAGTTGAAATTGATATTGCTGGTGAACTTTTTCATGCATCTGGAAGGGTGGTTCTAGAGAGAAACTACTTGGATGTTTATCGCTATGAATCTTGGGGTGGAACAATGCTACCAACATATACTGTTGGTCAACAGTTCGTTCCAACAACATTGACCCTTGATTCAGGAGTAACCCGGCCACCACCACTTCTTAGTGAAGCTGATCTTCTTACTTGTATGGACAAGGTAAAATTTTTAGATGATACAGGATGTCATAGACTGAACCCTTTGGAGGGTATTGGTACAGATGCTACTATGCATGATCACATAAAAAAGTTGCTTGATCGATTTTATGCAACTAAGGATGCTAACACTCGTTTCACACCAACTAATCTTGGTGAAGCACTTGTTATGGGATATGATGACATGGGGTATAAACTTTGGAAACCATATCTTAGAGCAGCTATGGAACGTGATATGAAATCAGTCAGTGAAGGGACTAAAAGCAAATCTGAAGTTTTGGCAATTAGCTTGCAGCAGATGAAAGCTTGTTTCCTTGATTTGAAAACTAAAAAGATTCCTTTGAGGAAAAAAATGGAAAGAGAAAGACAAGGTAGATCCAACAGTAGTTGTGGTGAAAGTGAAGAATTAATTAACAAGGCTTACTTGAATTTGGTCATTGCAGCGGAGACACGGAAACTGATATTTATGATCGGCAATCACTGTGTCTTTTTGCACACACTACCTCCTTTGATCACTTTCTTCTTCTGCATCATGACAAATAATCCTTACTACTTGAACAACAATGGTTATTGGTTCGACCTTAATTCTCCAAGCAGCACCTATGTTTTTGGTTCCAATCACGAGTCTCCACCGAGAAGAGAAGCGCTTCCTCTCCTGAATAAGCTAAGCCCTAGCAGGAGTACGAGTAGTAGGCCTCAAGATCTGGAATCTTCGTTTGGTGCCATGGAAGTGAAGGAGAAGCACAAGAGAGGAGATGACGGCGATGAGAGTGTGACGGTGGCTTTGCACTTAGGGCTTCCAGAAACAAGAAGTAAGAATATGACATGCGAAGAAGAAGTTTCAGCAGCGTCAGTGTCACAAGAACAAGAAGAAGGAGGAGGAGGAGGAAGAGGTTCTGATTCGAAATCGATGAATCGAGGTCAATATTGGATCCCAACACCGGCTCAGATTCTGATTGGTCCAACACAGTTCTCTTGCCCCCTTTGTTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAATATAGGAAGGGGCCAGAATCACTAAGGGGAACACAACCAACAGCAATGCTTAGGCTTCCATGCTACTGCTGTGCACCAGGGTGTAAGAACAACATTGATCATCCAAGAGCCAAGCCTCTCAAAGATTTCAGAACCCTCCAAACACACTACAAGAGGAAGCATGGAATCAAGCCTTTCATGTGCAGGAAGTGTTGCAAGGCCTTTGCTGTGAGAGGTGATTGGAGGACTCATGAGAAGAACTGTGGCAAGCTTTGGTATTGTTCTTGTGGCTCTGATTTCAAGCATAAGAGGTCTCTCAAGGATCATATCAAGGCCTTTGGGAATGGTCACAAGGCTTATGGCATTGATTCTCTTGATCAAGATGATAATGAACCTGGCTCTGAAATTGACCAAGAAAATGATCATCTTTCTAATTCTACTACTCATCATCATCATACTTGA 3021 0.4419 MGARTVTVLNVAEKPSVARSVSTILSRNQGIRMREGRSRYNKIFEFSYSIRGQSCHMLFTSVTGHLMELEFDERFRKWHSCDPADLYHAPVRKSVPEDKKDIKRTLEEEARRCQWLVLWLDCDREGENIAFEVVDVCTMANQNLTIKRARFSALIDREIHQAVQNLVEPNKWFADAVDARQEIDLRIGASFTRFQTMLMKDAFIIDTASGDRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWTINCSHRSDEGLANFNWMRGHLFDYTCAVVIYEMCIEEPTATVTDVKQQEKLKYPPHPLNTIELEKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDSFSSRTDLHTIVQEQQAHPEWGTYAQRLLDPETGLWRNPRGGGHDDKAHPPIHPTKFSSGESNWSQDHHKLYELVVRHFLACVSKPAVGAETTVEIDIAGELFHASGRVVLERNYLDVYRYESWGGTMLPTYTVGQQFVPTTLTLDSGVTRPPPLLSEADLLTCMDKVKFLDDTGCHRLNPLEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLGEALVMGYDDMGYKLWKPYLRAAMERDMKSVSEGTKSKSEVLAISLQQMKACFLDLKTKKIPLRKKMERERQGRSNSSCGESEELINKAYLNLVIAAETRKLIFMIGNHCVFLHTLPPLITFFFCIMTNNPYYLNNNGYWFDLNSPSSTYVFGSNHESPPRREALPLLNKLSPSRSTSSRPQDLESSFGAMEVKEKHKRGDDGDESVTVALHLGLPETRSKNMTCEEEVSAASVSQEQEEGGGGGRGSDSKSMNRGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHKAYGIDSLDQDDNEPGSEIDQENDHLSNSTTHHHHT* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0119 1006 CDD TOP1Ac 173 615 IPR013497 GO:0003677|GO:0003916|GO:0006265
Amo18g0119 1006 Gene3D Topoisomerase I, domain 3 240 498 IPR013825 -
Amo18g0119 1006 ProSiteProfiles Toprim domain profile. 7 154 IPR006171 -
Amo18g0119 1006 SUPERFAMILY Prokaryotic type I DNA topoisomerase 8 612 IPR023405 -
Amo18g0119 1006 PANTHER DNA TOPOISOMERASE 3-ALPHA 7 647 - -
Amo18g0119 1006 Gene3D Topoisomerase I, domain 2 176 615 IPR013824 -
Amo18g0119 1006 SMART topIban2 145 246 IPR003601 GO:0003677|GO:0003916|GO:0006265
Amo18g0119 1006 PRINTS Prokaryotic DNA topoisomerase I signature 334 343 IPR013497 GO:0003677|GO:0003916|GO:0006265
Amo18g0119 1006 PRINTS Prokaryotic DNA topoisomerase I signature 116 129 IPR013497 GO:0003677|GO:0003916|GO:0006265
Amo18g0119 1006 PRINTS Prokaryotic DNA topoisomerase I signature 216 234 IPR013497 GO:0003677|GO:0003916|GO:0006265
Amo18g0119 1006 PRINTS Prokaryotic DNA topoisomerase I signature 416 432 IPR013497 GO:0003677|GO:0003916|GO:0006265
Amo18g0119 1006 PRINTS Prokaryotic DNA topoisomerase I signature 529 543 IPR013497 GO:0003677|GO:0003916|GO:0006265
Amo18g0119 1006 Gene3D - 2 169 - -
Amo18g0119 1006 ProSitePatterns Zinc finger C2H2 type domain signature. 837 857 IPR013087 -
Amo18g0119 1006 MobiDBLite consensus disorder prediction 784 818 - -
Amo18g0119 1006 MobiDBLite consensus disorder prediction 751 767 - -
Amo18g0119 1006 PANTHER PROKARYOTIC DNA TOPOISOMERASE 7 647 IPR000380 GO:0003677|GO:0003917|GO:0006265
Amo18g0119 1006 MobiDBLite consensus disorder prediction 732 747 - -
Amo18g0119 1006 Pfam Toprim domain 9 153 IPR006171 -
Amo18g0119 1006 SMART toprim5 7 142 IPR006171 -
Amo18g0119 1006 SMART topIaneu2 292 567 IPR003602 GO:0003677|GO:0003916|GO:0006265
Amo18g0119 1006 CDD TOPRIM_TopoIA_TopoIII 7 166 IPR034144 -
Amo18g0119 1006 MobiDBLite consensus disorder prediction 977 1006 - -
Amo18g0119 1006 Gene3D Topoisomerase I, domain 4 300 430 IPR013826 -
Amo18g0119 1006 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 329 343 IPR023406 GO:0003917
Amo18g0119 1006 MobiDBLite consensus disorder prediction 714 767 - -
Amo18g0119 1006 Pfam DNA topoisomerase 170 604 IPR013497 GO:0003677|GO:0003916|GO:0006265
Amo18g0119 1006 ProSiteProfiles Zinc finger C2H2 type domain profile. 835 862 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0119 Amo-Chr18 2115745 2130523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0119 769 997 C2H2 Transcription Factor Family AT3G57670 69.884 6.25e-122 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo18g0119 Topoisom_bac 5.2e-109 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0119 K03165 - jre:109018851 1088.17