Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0115 ATGAATTCAAACAACTGGCTATCATTCCCACTCTCTCCAACTCATTCATCACTACCACCTCTGGGAACATTGGTGAATGACAACATCGATAACTCCTTTCAAAATCATGATTGGAATCTGATAAACAATGAGAGCAGCAGCAGTAGTCAAGTTCCGAAGGTAGCAGATTTTCTTGGTGTGAGTAACAAGTCTGAGAATGAGTCAGATCTTGCAGGCTTGGATGATGACTCGGATTACTTGTTCAACGCAAACACAACCCTTTTGCCTCTGCAATCACTCACACTCTCCATGGCTACTGCCAACAAGGACTCCACTACTTCCGACACCACTTGTGCCACTGCCATCGTTGAAGCTTCAGCTGCTGCCCCGAGAAGAGCTTTGGATACCTTTGGTCAGAGAACTTCTATTTATCGTGGTGTAACAAGACATAGGTGGACTGGAAGGTATGAAGCTCATCTATGGGATAATAGTTGTAGAAGGGAGGGTCAATCAAGAAAAGCCATAAAGTTCAGAGGTCTAAATGCAGTTACAAACTTCGACATGAGTCGCTACGATGTGAAAGCCATTCTTGAAAGCAACACACTTCCCATTGGAGGAGGTGCTGCAAAACGCTTAAAGGAAGCTCAGGCTCTAGAATCTTCTAGAAAGACTAATAGAGATGATATCATAGCATTGGGATCCACCTTTCCATACGGATCTTCTTCATCAAACACAACCGCCACCAGATTTTTGCAGCAAGCAACAGCTTATCCTTTAATGCCGCAGCACCACTTCGATCATCATCATCATCAACCATTGTTAACGTTACAGAACCATGACATATCACAACATTACAACACTGATCCTGCTTCTTCTTCGTTTCATCATACTAATTCTTATCTCCAAACGCAGCTTCAGCTCCATCATCAACAGCATCAAACTACTTCTTCTTCTTCTTCTTCTTCATACAATAATAATAATGCTCAATTTTACAGCAGCTACCTTCAGGGATTCATGGACCATAACAATGGGAATGGCGGAGGAGGTTACCATCATCATCATCATAACACTAATAATATGATTGGGATTGGAATGGGTTCTAATAATAACTCCTCATCGAGCAATGCCACAGCAGTGGGATCAGCGGAGGAGCTTGCTCTTGTGAAGGTTGATTATGACATGCCTTCCGCGGGATACGGCGGCTGGTCGCCGGCGGCAGACACCATGCACGGTTCAAACGGCGGTGGTAATTGA 1233 0.4396 MNSNNWLSFPLSPTHSSLPPLGTLVNDNIDNSFQNHDWNLINNESSSSSQVPKVADFLGVSNKSENESDLAGLDDDSDYLFNANTTLLPLQSLTLSMATANKDSTTSDTTCATAIVEASAAAPRRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKTNRDDIIALGSTFPYGSSSSNTTATRFLQQATAYPLMPQHHFDHHHHQPLLTLQNHDISQHYNTDPASSSFHHTNSYLQTQLQLHHQQHQTTSSSSSSSYNNNNAQFYSSYLQGFMDHNNGNGGGGYHHHHHNTNNMIGIGMGSNNNSSSSNATAVGSAEELALVKVDYDMPSAGYGGWSPAADTMHGSNGGGN* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0115 410 Gene3D AP2/ERF domain 136 164 IPR036955 GO:0003700|GO:0006355
Amo18g0115 410 SMART rav1_2 136 186 IPR001471 GO:0003700|GO:0006355
Amo18g0115 410 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 166 - -
Amo18g0115 410 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 167 369 - -
Amo18g0115 410 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 5 166 - -
Amo18g0115 410 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 167 369 - -
Amo18g0115 410 SUPERFAMILY DNA-binding domain 135 182 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0115 Amo-Chr18 2083428 2086691 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0115 120 409 AP2-EREBP Transcription Factor Family AT3G20840 43.963 1.95e-52 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0115 K09285 - cpap:110811803 220.32