Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0111 ATGAATTCAAACAACTGGCTATCATTCCCACTCTCTCCAACTCATTCATCACTACCACCTCTGGGAACATTGGTGAATGACAACATCGATAACTCCTTTCAAAATCATGATTGGAATCTGATAAACAATGAGAGCAGCAGCAGTAGTCAAGTTCCGAAGGTAGCAGATTTTCTTGGTGTGAGTAACAAGTCTGAGAATGAGTCAGATCTTGCAGGCTTGGATGATGACTCGGATTACTTGTTCAACGCAAACACTACCCTTTTGCCTCTGCAAGTTCTTTCTAATAATAGCAGCTATGACTACCAACAACAACAAGAAGAGAGTAACAACAATAACAGTAGTAATCTTCATCAGTCACTCACACTCTCCATGGCTACTGCCAACAAGGACTCCACTACTTCCGACAACACTTGTGCCACTGCCATCGTTGAAGCTTCAGCCGCTGCCCCGAGAAGAGCTTTGGATACCTTTGGTCAGAGAACTTCTATTTATCGTGGTGTAACAAGACATAGGTGGACTGGAAGGTATGAAGCTCATCTATGGGATAATAGTTGTAGAAGGGAGGGTCAATCAAGAAAAGCCATAAAGTTCAGAGGTCTAAACGCAGTTACAAACTTCGACATGAGTCGCTACGATGTGAAAGCCATTCTTGAAAGCAACACACTTCCCATTGGAGGAGGTGCTGCAAAACGCTTAAAGGAAGCTCAGGCTCTAGAATCTTCTAGAAAGACTAATAGAGATGACATCATAGCATTGGGATCCACCTTTCCATACGGATCTTCTTCATCAACCACAACCGCCACCAGATTTTTGCAGCAAGCAACTGCTTATCCTTTAATGCCACAGCACCACTTCGATCATCATCATCATCAACCATTGTTAACGTTACAGAACCATGACATATCACAACATTACAACACTGATCCTGCTTCTTCGTTTCATCATACTAATTCTTATCTCCAAAGGCAGCTTCAACTCCATCATCAACAGCATCAAACTACTTCTTCTTCTTCATCTTCATACAATAATAATAATGCTCAATTTTACAGCAGCTACCTTCAGGGATTCATGGACCATAACAATGGGAATGGAGGAGGAGGTTACCATCATCATCATCATAACACTAATAATATGCTTGGGATTGGAATGGGTTCTAATAATAACTCCTCATCGAGCAATGCCACAGCAGTGGGATCAGCGGAGGAGCTTGCTCTTGTGAAGGTTGATTATGACATGCCTTCCGCGGGATACGGCGGCTGGTCGCCGGCRGCAGACACCATGCACGGTTCAAACGGCGGTGTAAATTAA 1308 0.432 MNSNNWLSFPLSPTHSSLPPLGTLVNDNIDNSFQNHDWNLINNESSSSSQVPKVADFLGVSNKSENESDLAGLDDDSDYLFNANTTLLPLQVLSNNSSYDYQQQQEESNNNNSSNLHQSLTLSMATANKDSTTSDNTCATAIVEASAAAPRRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKTNRDDIIALGSTFPYGSSSSTTTATRFLQQATAYPLMPQHHFDHHHHQPLLTLQNHDISQHYNTDPASSFHHTNSYLQRQLQLHHQQHQTTSSSSSSYNNNNAQFYSSYLQGFMDHNNGNGGGGYHHHHHNTNNMLGIGMGSNNNSSSSNATAVGSAEELALVKVDYDMPSAGYGGWSPAADTMHGSNGGVN* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0111 435 SUPERFAMILY DNA-binding domain 162 209 IPR016177 GO:0003677
Amo18g0111 435 Gene3D AP2/ERF domain 163 191 IPR036955 GO:0003700|GO:0006355
Amo18g0111 435 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 5 193 - -
Amo18g0111 435 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 194 394 - -
Amo18g0111 435 SMART rav1_2 163 213 IPR001471 GO:0003700|GO:0006355
Amo18g0111 435 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 193 - -
Amo18g0111 435 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 194 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0111 Amo-Chr18 2015993 2019160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0111 147 434 AP2-EREBP Transcription Factor Family AT3G20840 44.272 1.55e-50 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0111 K09285 - cpap:110811803 224.557