Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0106 ATGACAAATAATCCTTACTACTTGAACAACAATGGTTATTGGTTCGACCTTAATTCTCCAAGCAGCACCTATGTTTTTGGTTCCAATCACGAGTCTCCACCGAGAAGAGAAGCGCTTCCTCTCCTGAATAAGCTAAGCCCTAGCAGGAGTACGAGTAGTAGGCCTCAAGATCTGGAATCTTCGTTTGGTGCCATGGAAGTGAAGGAGAAGCACAAGAGAGGAGATGACGGCGATGAGAGTGTGACGGTGGCTTTGCACTTAGGGCTTCCAGAAACAAGAAGTAAGAATATGACATGCGAAGAAGAAGTTTCAGCAGCGTCAGTGTCACAAGAACAAGAAGAAGGAGGAGGAGGAGGAGGAAGAGGTTCTGATTCAAATTCAAATTCGATGAATCGAGGTCAATATTGGATCCCAACACCGGCTCAGATTCTGATTGGTCCAACACAGTTCTCTTGCCCCCTTTGTTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAATATAGGAAGGGGCCAGAATCACTAAGGGGAACACAACCAACAGCAATGCTTAGGCTTCCATGCTACTGCTGTGCACCAGGGTGTAAGAACAACATTGATCATCCAAGAGCCAAGCCTCTCAAAGATTTCAGAACCCTCCAAACACACTACAAGAGGAAGCATGGAATCAAGCCTTTCATGTGCAGGAAGTGTTGCAAGGCCTTTGCTGTGAGAGGTGATTGGAGGACTCATGAGAAGAACTGTGGSAAGCTTTGGTATTGTTCTTGTGGCTCTGATTTCAAGCATAAGAGGTCTCTCAAGGATCATATCAAGGCCTTTGGGAATGGTCACAAGGCTTATGGCATTGATTCTCTTGATCAAGATGATAATGAACCTGGCTCTGAAATTGACCAAGAAAATGATCATCTTTCTAATTCTACTACTCATCATCATCATACTTGA 966 0.4451 MTNNPYYLNNNGYWFDLNSPSSTYVFGSNHESPPRREALPLLNKLSPSRSTSSRPQDLESSFGAMEVKEKHKRGDDGDESVTVALHLGLPETRSKNMTCEEEVSAASVSQEQEEGGGGGGRGSDSNSNSMNRGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHKAYGIDSLDQDDNEPGSEIDQENDHLSNSTTHHHHT* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0106 321 ProSitePatterns Zinc finger C2H2 type domain signature. 152 172 IPR013087 -
Amo18g0106 321 MobiDBLite consensus disorder prediction 44 59 - -
Amo18g0106 321 SUPERFAMILY beta-beta-alpha zinc fingers 216 254 IPR036236 -
Amo18g0106 321 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 18 309 - -
Amo18g0106 321 MobiDBLite consensus disorder prediction 26 133 - -
Amo18g0106 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 150 177 IPR013087 -
Amo18g0106 321 MobiDBLite consensus disorder prediction 292 321 - -
Amo18g0106 321 PANTHER ZINC FINGER PROTEIN WIP2 18 309 IPR043584 GO:0003700|GO:0010468
Amo18g0106 321 Gene3D Classic Zinc Finger 149 172 - -
Amo18g0106 321 MobiDBLite consensus disorder prediction 63 80 - -
Amo18g0106 321 Gene3D Classic Zinc Finger 232 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0106 Amo-Chr18 1978333 1979953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0106 81 312 C2H2 Transcription Factor Family AT3G57670 70.270 4.85e-130 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo18g0106 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0106 - - gmx:100789416 431.795