Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0083 ATGACAAATAATCCTTACTACTTGAACAACAATGGTTATTGGTTCGACCTTAATTCTCCAAGCAGCACCTATGTTTTTGGTTCCAATCATCACGAGTCTCCACCAAGAATTGAAGCTCTTCCTCTCCTGAATAAGCTAAGCCCTAGCAGGAGTACTAGTAGTAGGCCTCAAGATCTGGAATCTTCGTTTGGTGCCATGGAAGTGAAGGAGAAGCACAAGAGAGGAGATGACGGCGATGAGAGTGTGACGGTGGCTTTGCACTTAGGGCTTCCAGAAACAAGAAGTAAGAATATGACATGCGAAGAAGAAGTTTCAGCAGCGTCAGTGTCACAAGAACAAGAAGAAGGAGGAGGAGGAGGAGGAAGAGGTTCTGATTCAAATTCAAATTCGATGAATCGAGGTCAATATTGGATCCCAACACCGGCTCAGATTCTGATTGGTCCAACACAGTTCTCTTGCCCCCTTTGTTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAATATAGGAAGGGGCCAGAATCACTGAGGGGAACACAACCAACAGCAATGCTTAGGCTTCCATGCTACTGCTGTGCACCAGGGTGTAAGAACAACATTGATCATCCAAGAGCCAAGCCTCTCAAAGATTTCAGAACCCTCCAAACACACTACAAGAGGAAGCATGGAATCAAGCCTTTCATGTGCAGGAAGTGTTGCAAGGCCTTTGCTGTGAGAGGTGATTGGAGGACTCATGAGAAGAACTGTGGGAAGCTTTGGTATTGTTCTTGTGGCTCTGATTTCAAGCATAAGAGGTCTCTCAAGGATCATATCAAGGCCTTTGGGAATGGTCACAAGGCTTATGGCATTGATTCTCTTGATCAAGATGATAATGAACCTGGCTCTGAAATTGACCAAGAAAATGATCATCTTTCTAATTCTACTACTCATCATCATCATCATACTTGA 972 0.4424 MTNNPYYLNNNGYWFDLNSPSSTYVFGSNHHESPPRIEALPLLNKLSPSRSTSSRPQDLESSFGAMEVKEKHKRGDDGDESVTVALHLGLPETRSKNMTCEEEVSAASVSQEQEEGGGGGGRGSDSNSNSMNRGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHKAYGIDSLDQDDNEPGSEIDQENDHLSNSTTHHHHHT* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0083 323 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 19 310 - -
Amo18g0083 323 MobiDBLite consensus disorder prediction 93 134 - -
Amo18g0083 323 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 178 IPR013087 -
Amo18g0083 323 SUPERFAMILY beta-beta-alpha zinc fingers 217 255 IPR036236 -
Amo18g0083 323 Gene3D Classic Zinc Finger 150 173 - -
Amo18g0083 323 Gene3D Classic Zinc Finger 232 307 - -
Amo18g0083 323 MobiDBLite consensus disorder prediction 293 323 - -
Amo18g0083 323 PANTHER ZINC FINGER PROTEIN WIP2 19 310 IPR043584 GO:0003700|GO:0010468
Amo18g0083 323 MobiDBLite consensus disorder prediction 46 65 - -
Amo18g0083 323 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Amo18g0083 323 MobiDBLite consensus disorder prediction 46 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0083 Amo-Chr18 1714764 1716579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0083 82 313 C2H2 Transcription Factor Family AT3G57670 70.270 8.08e-130 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo18g0083 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0083 - - gmx:100789416 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0083 18 1714764 1716579 Amo18g0083 18 1714764 1716579 ECH
Amo16g0189 16 2581807 2583612 Amo18g0083 18 1714764 1716579 ECH