Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0079 ATGGACCATGACAAGACTGGATGCCAAGCTCCCCCAGAAGGTCCTATATTATGCATTAACAACTGTGGATTTTTCGGGAGTCCGGCTACCATGAACATGTGTTCCAAGTGCCACAAGGACATGATGCTGAAACAGGAGCAGGCCAAGCTTGCAGCATCTTCCATAGGAAATCTTATGAATGGGTCATCAAGTAGCAGTGGAAATGAACCTGTTATTGCTGCCAATGTGGATATTCCAGTCAATTCAACAGAACCAAAAGCTATTTCCACGCAACCTTTATCTGCTTCAGTCTCAGAGGAGAGTGGTGAGGCAAAGCCCAAGGACGGTCCAAAACGTTGCAGCAGCTGCAATAAGAGGGTMGGTTTGACAGGATTTAATTGTCGATGTGGTAACCTTTTCTGTGCCGTACATCGCTACTCAGACAAGCATGACTGCCCGTATGATTACCGTACTGCTGCACGGGATGCTATAGCGAAAGCGAACCCAGTTGTGAAGGCCGAGAAGCTTGATAAGATCTAG 519 0.4701 MDHDKTGCQAPPEGPILCINNCGFFGSPATMNMCSKCHKDMMLKQEQAKLAASSIGNLMNGSSSSSGNEPVIAANVDIPVNSTEPKAISTQPLSASVSEESGEAKPKDGPKRCSSCNKRVGLTGFNCRCGNLFCAVHRYSDKHDCPYDYRTAARDAIAKANPVVKAEKLDKI* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0079 172 Gene3D - 87 168 IPR035896 -
Amo18g0079 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Amo18g0079 172 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Amo18g0079 172 MobiDBLite consensus disorder prediction 83 113 - -
Amo18g0079 172 SUPERFAMILY AN1-like Zinc finger 96 167 IPR035896 -
Amo18g0079 172 PANTHER ZINC FINGER AN1 DOMAIN STRESS-ASSOCIATED PROTEIN 1 172 - -
Amo18g0079 172 Pfam AN1-like Zinc finger 113 149 IPR000058 GO:0008270
Amo18g0079 172 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Amo18g0079 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 53 - -
Amo18g0079 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
Amo18g0079 172 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Amo18g0079 172 Gene3D - 4 68 - -
Amo18g0079 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 172 - -
Amo18g0079 172 MobiDBLite consensus disorder prediction 83 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0079 Amo-Chr18 1668504 1671252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0079 8 172 C2H2 Transcription Factor Family AT3G52800 44.509 1.58e-39 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0079 - - gmx:100802969 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0079 18 1668504 1671252 Amo18g0079 18 1668504 1671252 ECH