Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0072 ATGGAGTCAGATCTTCAGGCACCGAGTTCGAACGGGTTGACACGGTACCGATCGGCACCGAGTTCATACTTCACGGACATAATTGACCGCGAATTCTACGAGCACATTTTCAACCGTCCGTCAAGTCCAGAAACAGAGCGAGTCTTCTCCAGGTTCATGAACAGTCTCCGTGACGATGCTGCACCTGAAGACGATTCACTCCATCTCGATTCTTCTTCTGTCAAAGAAGAACACGATATCACTCCCTCGCAACCTCTTCTCTTTCAACACCACCAGCAGCAGCAGCAGAACAACGTCAATAGCTTCAACTATCAAAGCACGTCGAGACCGCCGTTGCCGAATCAGAATCTTGCTTCCTCCGGTGGTGTAGAAGGAGTGTATTCTAATAATAATAATAACAATAATCGGTTGCCGCAGATGAAGAATCAATCTAATCTTGTTAGGCACAGTAGCTCACCTGCTGGACTATTTTCCCAAATTCACATTGAAAATGGGTATGTTGTTGATATGCGAGGGATGGGAACTTTAGGAGCAGTAAATAAGAGTGTGGAAGAAGTGAAGTTCTCTTCTTCAAGGACAAGGAGGTTGAAGAATCCACAGAACTACTCCTCCTCCGCCTCCGGGAGAATGTCTTCAATAGCCGAGATTGGCAACAGGGATAGCAGAGAAGACAATCCAGATGCTGAAGCTTTTGGAGAAACCCACGGCGAGGATTTCATCACGGAGTTCGCGCCCTGGGATGATTCCGTCGCCGTGAATGACATTGTTGCTGGTCTAAAAAGATTCAGAGATGATGATGTCAAGCCATTTTCTTCTGGTTTGAATGCAGCTGAGACTCAGAACGAAAGTAGAGGACAGCAAGCTGCTCCTTTGGCTCATCAAATGAGTTTGCCAAATACTTCAGCTGAAATGGCAGCCATTGAGAAGTTCTTGCAATTTTCAGATTCTGTTCCGTGCAAAATTCGTGCCAAGAGAGGCTGTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATAAGTGAGCGTATGAGGAAACTACAAGATCTGGTGCCTAACATGGACAAGCAAACAAACACAGCAGACATGTTGGATTTGGCTGTCGATTACATCAAAGACCTTCAAAAGCAAGTTGAGACGCTTTCAGACTGTCAAGCTAAGTGTACGTGTTCTTCCAAGCCACAGCAATAA 1200 0.4583 MESDLQAPSSNGLTRYRSAPSSYFTDIIDREFYEHIFNRPSSPETERVFSRFMNSLRDDAAPEDDSLHLDSSSVKEEHDITPSQPLLFQHHQQQQQNNVNSFNYQSTSRPPLPNQNLASSGGVEGVYSNNNNNNNRLPQMKNQSNLVRHSSSPAGLFSQIHIENGYVVDMRGMGTLGAVNKSVEEVKFSSSRTRRLKNPQNYSSSASGRMSSIAEIGNRDSREDNPDAEAFGETHGEDFITEFAPWDDSVAVNDIVAGLKRFRDDDVKPFSSGLNAAETQNESRGQQAAPLAHQMSLPNTSAEMAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQVETLSDCQAKCTCSSKPQQ* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0072 399 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 330 389 IPR036638 GO:0046983
Amo18g0072 399 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 327 377 IPR011598 GO:0046983
Amo18g0072 399 MobiDBLite consensus disorder prediction 59 77 - -
Amo18g0072 399 Gene3D - 328 396 IPR036638 GO:0046983
Amo18g0072 399 MobiDBLite consensus disorder prediction 193 210 - -
Amo18g0072 399 SMART finulus 333 383 IPR011598 GO:0046983
Amo18g0072 399 MobiDBLite consensus disorder prediction 101 139 - -
Amo18g0072 399 Pfam Helix-loop-helix DNA-binding domain 332 378 IPR011598 GO:0046983
Amo18g0072 399 MobiDBLite consensus disorder prediction 191 210 - -
Amo18g0072 399 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 11 62 - -
Amo18g0072 399 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 91 396 - -
Amo18g0072 399 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 11 62 - -
Amo18g0072 399 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 91 396 - -
Amo18g0072 399 MobiDBLite consensus disorder prediction 59 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0072 Amo-Chr18 1551861 1554774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0072 6 395 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 38.756 7.40e-73 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo18g0072 HLH 5.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0072 - - gmx:100805812 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0072 18 1551861 1554774 Amo18g0072 18 1551861 1554774 ECH
Amo18g0072 18 1551861 1554774 Amo13g0565 13 7170646 7174327 ECH
Amo16g0160 16 2120094 2123039 Amo18g0072 18 1551861 1554774 ECH
Amo12g1782 12 85725200 85728152 Amo18g0072 18 1551861 1554774 ECH