Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0071 ATGACGGATACTTCAGTTTTCATGGGTACCGCAATTTTGGAGCCTCGGAATGATATGGAGTTTGAATCTCATGAGGCTGCATATGCATTTTACAAAGAATATGCTAAGTCTGCTGGGTTTGGTACTGCCAAGTTGAGCAGTCGTAGGTCTAGGGCATCCAAGGAATTCATTGATGCTAAATTTTCGTGTATAAGGTATGGTAATAAGCAGCAATCCGATGATGCCATTAATCCGCGGCCTTCTCCGAAAATTGGTTGTAAAGCAAGCATGCATGTGAAGAGAAGACAGGATGGTAAGTGGTATGTCTATAGATTTGAGAAGGATCATAATCATGAGCTTTTGCCTGCCCAAGCTCATTTCTTTCGGAGTCATAGGAGTTCTGATCCACCGAGTAATGATGTTCGGATGCGACGGAGGAAGAACTCAACTACCGTTTCTAAATTGTTTAGCGCGTATCAGAATGTTGATTGTTTAGAGAATTTCATGAAAAATCAACATGATCGTGGACGGAGTCTGATTTTAGAACCAGGGCATGCACAGCATGAAGAGGAAGCAAAGGCAAATTTTGATGCATGGCATGAAACACCTGAATTGAGGTCTCCTTCCCCTTTTGAAAAACAAATGTTATTAGTTTACACACATGAAATTTACAAAAGGTTTCAGGTTGAGGTTTTGGGTGCAGCTGCTTGCCATCTCAAGAGAGAGAACACTGGAGTGACTGAAACTTATTCTGTGAAAGACTTTGAAAACAATGAAAGCTATATGGTAGAATGGAACACGTCTAACTCAGATATATGTTGTTCATGTCGCTCATTTGAATATAAAGGCTATCTTTGTAGACATGCTATTGTTGTTCTACAAATGTCTGGTGTTTTCAGCATCCCATCAAAGTATATATTGCAGAGATGGACCAATGCTGCTTTGAGCAGGCATCCTATTGGTGAAAAGCTGGAAGAGGTTCAAGTCAAGGTCCGGCGATTCAATGATTTATGTCGACGGGCCATAATATTGGGTGAAGAAGGTTCTTTATCACAGGAAAGCTACTATCTCGCTTTAGGTGCAATAAGCGAAGCTTTAAAGCAATGTGCAAATTTGAGCAACCCTGTTGAGAATGAAACAAGAGCTGATGCCTCAGCTACCCATGTTGTTTGTAATGATGAAGAGTATCAATCTATTATTTCATCTAATAATATAACCCCTGTTCCAAAAATTAATACAAGTAATAAGGTTGCGAGGACTCTTGCAGCTTGTAGGAATCTCGGAAGCACAGAAAATGGTGAACGAAATAAAGAGAAGGTTTCCCAGCTTGAAGCAGCATGTGTGAAAGATGGTTTTCAACAAGTGGATCCAACTGATTTGACTCCTCCACATACTGCCATCCCCATGCAGTTTCACAGTATGATTCCAGCCCTGTTCCACAATCACAACGTTTCACCGGCACAGTTTCATGCTCATTTACATGAAACTCATCATACCAAAGACAATGTATAA 1491 0.4058 MTDTSVFMGTAILEPRNDMEFESHEAAYAFYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDAINPRPSPKIGCKASMHVKRRQDGKWYVYRFEKDHNHELLPAQAHFFRSHRSSDPPSNDVRMRRRKNSTTVSKLFSAYQNVDCLENFMKNQHDRGRSLILEPGHAQHEEEAKANFDAWHETPELRSPSPFEKQMLLVYTHEIYKRFQVEVLGAAACHLKRENTGVTETYSVKDFENNESYMVEWNTSNSDICCSCRSFEYKGYLCRHAIVVLQMSGVFSIPSKYILQRWTNAALSRHPIGEKLEEVQVKVRRFNDLCRRAIILGEEGSLSQESYYLALGAISEALKQCANLSNPVENETRADASATHVVCNDEEYQSIISSNNITPVPKINTSNKVARTLAACRNLGSTENGERNKEKVSQLEAACVKDGFQQVDPTDLTPPHTAIPMQFHSMIPALFHNHNVSPAQFHAHLHETHHTKDNV* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0071 496 PANTHER PROTEIN FAR1-RELATED SEQUENCE 4 3 180 - -
Amo18g0071 496 ProSiteProfiles Zinc finger SWIM-type profile. 254 290 IPR007527 GO:0008270
Amo18g0071 496 Pfam FAR1 DNA-binding domain 30 115 IPR004330 -
Amo18g0071 496 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 181 454 IPR031052 GO:0006355
Amo18g0071 496 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 3 180 IPR031052 GO:0006355
Amo18g0071 496 PANTHER PROTEIN FAR1-RELATED SEQUENCE 4 181 454 - -
Amo18g0071 496 Pfam SWIM zinc finger 260 288 IPR007527 GO:0008270
Amo18g0071 496 SMART 26again6 265 292 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0071 Amo-Chr18 1538933 1542295 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo18g0071 FAR1 1.6e-29 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0071 - - adu:107461496 650.588