Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0030 ATGAACTACAACTTATTTGTTTGTGCTGCAGTGGAGCTCRGGATTGATGGCTCCATTAATGGTGAGACAATAGCACATGCTACCATAGGAGAAGTTAGCAGTAGCTTTGCTGATGAAGATAAAATTGCTAGCAGTTCCTTTGATCCAGCTTACAAACAAGATCAAGATGGTAATATAACACAAGATTCTTCTGGAGGGGACACAATCCCCTCAGGAATTCCTGCTGTATCGGTTGTGTCAGCTGATGAGCCATACGTGGGTCAGGAGTTTGATTCGGAAGCAACAGCGCATGCATTTTATAATGCATATGCCACGCGTGTTGGATTTGTCATACGTGTAAGTAAGCTCTCACGGTCAAGGCGTGATGGTTCTGCAATTGGACGTGCTCTTGTTTGCAACAAAGAGGGTTACAGAATGCCCGATAAGCGTGAAAAAATTGTAAGGCAAAGGGCAGAGACAAGGGTTGGTTGCAGGGCAATGATTTTGGTGAGGAAAGTTAGTTCCGGTAAATGGGTTGTCACAAAGTTTGTAAAGGAGCACACACACCCTTTGACACCTGGAAAAGGCAGAAGGGATTGCATTTATGAACAATATCCGAATGAACATGATAAAATTCGAGAACTATCTCAGCAATTGGCTATAGAGAAAAAACGGTGTGCAGCTTATAAAAGGCAACTTGAATTGTTATTTGAACACATTGAGGAGCATAATAATAGTCTTTCAAAGAAAATACAGCACATAGTAGGCAATGTGAAGGAGATTGAAGCTGAAGAACAACAGCGTCATAGATAG 792 0.4179 MNYNLFVCAAVELXIDGSINGETIAHATIGEVSSSFADEDKIASSSFDPAYKQDQDGNITQDSSGGDTIPSGIPAVSVVSADEPYVGQEFDSEATAHAFYNAYATRVGFVIRVSKLSRSRRDGSAIGRALVCNKEGYRMPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLTPGKGRRDCIYEQYPNEHDKIRELSQQLAIEKKRCAAYKRQLELLFEHIEEHNNSLSKKIQHIVGNVKEIEAEEQQRHR* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0030 263 Pfam FAR1 DNA-binding domain 99 185 IPR004330 -
Amo18g0030 263 Coils Coil 205 225 - -
Amo18g0030 263 MobiDBLite consensus disorder prediction 47 73 - -
Amo18g0030 263 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 9 261 - -
Amo18g0030 263 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 9 261 - -
Amo18g0030 263 MobiDBLite consensus disorder prediction 48 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0030 Amo-Chr18 951712 954317 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo18g0030 FAR1 8e-31 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0030 - - gmx:100806900 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0030 18 951712 954317 Amo18g0030 18 951712 954317 ECH
Amo18g0030 18 951712 954317 Amo13g0593 13 7484108 7486458 PCT
Amo13g0593 13 7484108 7486458 Amo18g0030 18 951712 954317 PCT