Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0025 ATGGCACTGAGTACGTACTTGAACGGAGATGCACTTCAAAGTTCAATAATATCAGAAATTTTCACCACAAAATTTCAAGAACTAACCACACCAGAAGAACTTACACTTGACCATTTTTACCACCAACACAGCCAAGAAGGCTTGTTTTCTAATAACTTTTTCTTTGACCCTTATTTTGACTTTAACAATGGATTTTTCCATCCTGAAATTTTGTCTTCTCATCAACTTGGTCATAGTTGCACTTCTTCTCATGACCCTTTTATCTCACCCAAACCCAATAATCTCTTTCAGATTGAATACTCTAATGTCAACACCCTTCTTTCATGTCCGAAACGCCAAAAGTACTTTCATAAGGATGAAGAACTCCAACTCTCTTCTCCATTTAAGGAGTATGCATCGCCCAGTCTATTTGATGGGTTTATACTGAATTCATCTTCTTTATTACCATCTGAAGAAGCAGCACTAGCAGAAGAACTACTATTACCTGCACCAGTGACAACACCGTCGTCAGACTTCATGGTTCCTAATGTTGTACGTAATGGTTTTTGTGTGGGAATTAATAATGAGAGTCAGAAGAAGGACAGTAAGAGAACTATCTCTGCACAGAGTATAGCGGCAAGGGAGAGAAGAAGAAATATCACAGAAAAGACACAAGAGCTTGGAAAGTTGGTTCCTGGTAGCTCAAAGATGAACACAGCTGAGATGCTCCATGCAGCTTCTAAATATGTGAAGTATCTTCAAACTCAAATTGGTATGCTTCAACTTATGAACACGCTCCAGAAAGAAGATGAGGTTGTTCCTCCAAGTGAAGATCTATGTGCTCTTATTACTTCTCCCTTTGTTCAAGAGAAGCTTTATTCTGAGGAACTATGCTTTGTCCCTAAAGACTTTGTTACAACTTTGACAAATCAGCGTGATGTTCGATCAAAGCCTACCATCTTTAAGGATCTTAAAGAGTTGATTGAAACAAATAATGTGCAGAAAAAAGCA 990 0.3818 MALSTYLNGDALQSSIISEIFTTKFQELTTPEELTLDHFYHQHSQEGLFSNNFFFDPYFDFNNGFFHPEILSSHQLGHSCTSSHDPFISPKPNNLFQIEYSNVNTLLSCPKRQKYFHKDEELQLSSPFKEYASPSLFDGFILNSSSLLPSEEAALAEELLLPAPVTTPSSDFMVPNVVRNGFCVGINNESQKKDSKRTISAQSIAARERRRNITEKTQELGKLVPGSSKMNTAEMLHAASKYVKYLQTQIGMLQLMNTLQKEDEVVPPSEDLCALITSPFVQEKLYSEELCFVPKDFVTTLTNQRDVRSKPTIFKDLKELIETNNVQKKA 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0025 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 195 258 IPR036638 GO:0046983
Amo18g0025 330 Gene3D - 191 263 IPR036638 GO:0046983
Amo18g0025 330 CDD bHLH_AtbHLH_like 202 254 IPR045239 -
Amo18g0025 330 Pfam Helix-loop-helix DNA-binding domain 203 247 IPR011598 GO:0046983
Amo18g0025 330 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 1 317 - -
Amo18g0025 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 197 246 IPR011598 GO:0046983
Amo18g0025 330 SMART finulus 203 252 IPR011598 GO:0046983
Amo18g0025 330 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 1 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0025 Amo-Chr18 905907 908728 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0025 160 324 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 46.108 5.61e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo18g0025 HLH 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0025 - - aip:107610272 616.305