Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0020 ATGGACAAGGACAAACCTCTTGTTCATGGTGGAGGTCTTCCACCTCCATCAGGACGTTATTCGGGTTACTCACCCACTGGAAATGCCTTCAATGTRAAATCCGAGCYGTCTTCATCGTCGTCATATCCTCCAATGGTTCCAGGTTCTAGCCCAGACTCCAGTCACTTTGGTCATGGAATGTCCTCAGATTCTAGTGGATTTAGTCACGATATTAGCAGAATGCCCGATAATCCTCCAAGAAATAGGGGACACAGGCGTGCTCATTCAGAGATTCTAACCCTACCTGATGATATCAGCTTCGACAGTGACCTTGGTGTCGTTGGAGGTGCCGATGTGCCGTCGTTTTCTGACGACACAGAGGAGGACTTACTTTCAATGTACCTCGATATGGATAAATTCAATTCATCATCTGCTACATCAACATTTCAAATGGGTGAGCCATCTAATGCTGCTGCAGCTTCAGGTTCGGTACCCACATCAACTCCTACATCAGGAGGGCCTACCTCTTCTGCAGAGAACAGTGTCCTTGGTAACAATGAACGGCCTAGAGTTAGACACCAGCACAGCCAATCCATGGATGGGTCAACAACCATCAAACMTGAGATGCTMGTCTCTGGTTCAGAAGACATATCTGCAGCTGATTCTAAAAAAGCAATGTCAGCTGCCAAGCTTGCCGAACTAGCCTTAATTGATCCCAAGCGTGCAAAGAGGATTTGGGCAAATAGGCAGTCTGCTGCAAGGTCAAAAGAGAGGAAGATGCGCTACATTGCTGAACTTGAAAGGAAGGTGCAGACATTGCAAACTGAAGCAACATCTTTGTCTGCACAGTTAACACTATTGCAGAGAGATACCAATGGACTTAATTCGGAGAACAATGAGCTGAAGTTGCGATTGCAAACCATGGAACAACAAGTTCACTTGCAAGATGCATTAAATGATGCGTTGAAAGAGGAAATTCAGCATTTGAAAATACTGACCGGTCAAGCTATGCCACCTAATAATGGAGGGCCTATGATGAACTTTGCTTCTTTTGGAGGGGGACGCAATTCTACCCGAATAATCATGCGATGCACACACTTCTAG 1083 0.4552 MDKDKPLVHGGGLPPPSGRYSGYSPTGNAFNVKSEXSSSSSYPPMVPGSSPDSSHFGHGMSSDSSGFSHDISRMPDNPPRNRGHRRAHSEILTLPDDISFDSDLGVVGGADVPSFSDDTEEDLLSMYLDMDKFNSSSATSTFQMGEPSNAAAASGSVPTSTPTSGGPTSSAENSVLGNNERPRVRHQHSQSMDGSTTIKXEMLVSGSEDISAADSKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLNSENNELKLRLQTMEQQVHLQDALNDALKEEIQHLKILTGQAMPPNNGGPMMNFASFGGGRNSTRIIMRCTHF* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0020 360 Gene3D - 232 285 - -
Amo18g0020 360 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 351 - -
Amo18g0020 360 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 351 - -
Amo18g0020 360 Pfam bZIP transcription factor 233 291 IPR004827 GO:0003700|GO:0006355
Amo18g0020 360 Coils Coil 249 318 - -
Amo18g0020 360 SUPERFAMILY Leucine zipper domain 233 284 IPR046347 GO:0003700|GO:0006355
Amo18g0020 360 MobiDBLite consensus disorder prediction 1 92 - -
Amo18g0020 360 MobiDBLite consensus disorder prediction 21 71 - -
Amo18g0020 360 SMART brlzneu 229 293 IPR004827 GO:0003700|GO:0006355
Amo18g0020 360 MobiDBLite consensus disorder prediction 137 177 - -
Amo18g0020 360 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 231 294 IPR004827 GO:0003700|GO:0006355
Amo18g0020 360 MobiDBLite consensus disorder prediction 75 92 - -
Amo18g0020 360 CDD bZIP_plant_RF2 234 283 IPR044759 GO:0003700|GO:0006355
Amo18g0020 360 MobiDBLite consensus disorder prediction 137 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0020 Amo-Chr18 883818 887012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0020 19 345 bZIP Transcription Factor Family AT1G06070 72.508 1.00e-158 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo18g0020 bZIP_1 4.7e-09 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0020 18 883818 887012 Amo18g0020 18 883818 887012 ECH
Amo18g0020 18 883818 887012 Amo13g0618 13 7674520 7677516 PCT
Amo13g0618 13 7674520 7677516 Amo18g0020 18 883818 887012 PCT