Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0013 ATGGATTCCGRGGACGATATGCACGACGCCAACGATGTGGAGTCACTCGACGAAGATTTCTACAGTGGCGAGACCGAAGAAGCTCCCATGGATTACAATGACTACGATGACGATGCCGATGACTACTTCGACGATGCTGATGATTCTGATAGGATTGACTCTCGCCGCCATGAGCAAAATTTTACCATATTGAAGGAATCGGATATTCAGCAAAGGCAGGAAGATGACATCACTAGAGTGGCAACCGTTCTTTCAATATCACGAGTTGCTGCGAGTATCCTGCTTCGTCATTACAATTGGAGTGTTAGTAAAGTGCACGATGCCTGGTTTGCTGACGAAGATCGAGTCCGTAAAACAGTTGGTTTGTTGGAGAAGCCAGTTGTCCAGCATCCTAATCCTAGAGAGATAACTTGTGGCATCTGTTTTGAAACGTATCCTCGTACYAAGATTCAAACTGCTACTTGTGGCCATCCTTATTGTTTTTCTTGCTGGGCAGGATATATTAGCACATCTATTAATGATGGTCCTGGATGTTTGATGCTGAGATGTCCCGATCCCACTTGTGGCGCTGCTGTTGATCAAGRCATGATTAATCTCTTAGCACCTGATGAAGATAAAGAAAAGTATGCCCGTTACCTTCTTAGGTCATATATTGAAGACAATAAGAAGACCAAGTGGTGTCCTGCTCCAGGCTGTGAATATGCTGTCAATTTTGACGCTGGCAGTGGAAATTATGATGTATCTTGCCTCTGTTCATATAGCTTTTGCTGGAATTGCACAGAGGAGGCTCATCGTCCAGTTGATTGTGGCACTGTGTCAAAGTGGATTCTGAAAAATAGTGCAGAATCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCGAAGTGCAAGCGACCAATTGAAAAAAATCAAGGGTGCATGCACATGACGTGTACTCCACCTTGTAAATTTGAATTTTGCTGGCTATGCTTTGGTGCATGGTCAGATCATGGTGAAAGGACTGGGGGTTTTTATGCTGGCAATCAATATGAGGCAGCAAAACAAGAGTGA 1059 0.4381 MDSXDDMHDANDVESLDEDFYSGETEEAPMDYNDYDDDADDYFDDADDSDRIDSRRHEQNFTILKESDIQQRQEDDITRVATVLSISRVAASILLRHYNWSVSKVHDAWFADEDRVRKTVGLLEKPVVQHPNPREITCGICFETYPRTKIQTATCGHPYCFSCWAGYISTSINDGPGCLMLRCPDPTCGAAVDQXMINLLAPDEDKEKYARYLLRSYIEDNKKTKWCPAPGCEYAVNFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCFGAWSDHGERTGGFYAGNQYEAAKQE* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0013 352 SUPERFAMILY RING/U-box 207 276 - -
Amo18g0013 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 219 IPR013083 -
Amo18g0013 352 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 352 - -
Amo18g0013 352 CDD RING-HC_RBR_TRIAD1_like 138 188 - -
Amo18g0013 352 SUPERFAMILY RING/U-box 133 219 - -
Amo18g0013 352 ProSiteProfiles TRIAD supradomain profile. 134 347 IPR044066 -
Amo18g0013 352 MobiDBLite consensus disorder prediction 1 51 - -
Amo18g0013 352 SUPERFAMILY RING/U-box 288 336 - -
Amo18g0013 352 ProSiteProfiles Zinc finger RING-type profile. 138 182 IPR001841 -
Amo18g0013 352 SMART ibrneu5 282 338 IPR002867 -
Amo18g0013 352 SMART ibrneu5 207 269 IPR002867 -
Amo18g0013 352 MobiDBLite consensus disorder prediction 11 47 - -
Amo18g0013 352 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 352 IPR031127 GO:0004842|GO:0016567
Amo18g0013 352 Pfam IBR domain, a half RING-finger domain 207 269 IPR002867 -
Amo18g0013 352 Pfam IBR domain, a half RING-finger domain 286 333 IPR002867 -
Amo18g0013 352 Gene3D - 265 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0013 Amo-Chr18 722208 724932 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0013 17 352 ARIADNE family AT1G65430 71.554 2.49e-180 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0013 K11968 - gmx:100810427 647.891