Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0012 ATGGCAAAGAATTCATTGGAGGGGTACACGCATTATTATGAGCGATGGGCCAGCAATCAATCCTCGAGGCAAAAAGCTCTTGCAGATCTACACCAGATGCAAACTGTTCATATTGAAAAGCTTAGTGACACACAATGCCAGCCTGAGTCACAGCTTAAGTTCATAACCGAGGCCTGGCTACAGATAGTTGAATGCCGAAGGGTGCTGAAGTGGACGTATGCATATGGATATTACTTGCCTGAGCATGAACATGCTAAAAAACAGTTTTTTGAGTACTTGCAAGGTGAGGCGGAATCTGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAACTACAGTTGTTCCTTAATACTGATGGCCCATCTAAAGAATTCAATGACTTCCGCACAAAACTAGCTGGATTRACCAGTGTAACTAGAAACTACTTTGAGAATTTGGTTAGGGCTTTAGAGAATGGTTTATCTGATGTGGATAGTAATGGAGCTGCTTCAAGCAAAGCGACAAGCTCTAAAAATGCMGCAGGGAGCAGCAAGGGGAGAGGTGGAAGAGGAAAGGGAACTCTTCGGGCRAGCATGGCTAGTAGTAGAATGACCGAYGATAATCATTGGTCCTGTGAGCAATGTACCTATGSAAATGCGAAATCTGCCACCACGTGCCAGATCTGCAACCAACAGCGCCGATGA 684 0.4444 MAKNSLEGYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQLFLNTDGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGAASSKATSSKNAAGSSKGRGGRGKGTLRASMASSRMTDDNHWSCEQCTYXNAKSATTCQICNQQRR* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0012 227 SUPERFAMILY Ran binding protein zinc finger-like 199 226 IPR036443 -
Amo18g0012 227 SMART zf_4 201 225 IPR001876 -
Amo18g0012 227 Pfam Ariadne domain 2 155 IPR045840 -
Amo18g0012 227 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 1 177 IPR031127 GO:0004842|GO:0016567
Amo18g0012 227 Gene3D - 197 227 - -
Amo18g0012 227 Gene3D - 1 157 - -
Amo18g0012 227 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 1 177 - -
Amo18g0012 227 MobiDBLite consensus disorder prediction 158 193 - -
Amo18g0012 227 ProSiteProfiles Zinc finger RanBP2 type profile. 199 227 IPR001876 -
Amo18g0012 227 ProSitePatterns Zinc finger RanBP2-type signature. 203 222 IPR001876 -
Amo18g0012 227 MobiDBLite consensus disorder prediction 158 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0012 Amo-Chr18 720691 722083 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0012 1 226 ARIADNE family AT1G65430 68.584 2.11e-105 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0012 K11968 - gmx:100810427 398.282