Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0006 ATGGACTCCGAAGCTGACCCTCCTGAAACTGAAAACCCACCCAAAAGACACAAATGCTCGGCATGCTATAAGCAATACAAGAAAAAGGAGCATCTTATTGAGCACATGAAAATATCTTACCACTCTCTTCATCAGCCGAGATGTGGGGTTTGTCAAAAGCATTGCAAATCTTTTGAGTCTCTCAGGGAGCATCTTACCGGTCCATTGCCAAAAGGACTTTGTTCAACAATTTTCTCTCAACAAGGTTGTCAACTTTGCTTGTCACTATTTGATAGTGCCGTATCTCTCAGGGAGCATTTAGAAACATGCCGCTTATCTTCCCCTGCTCCTATGGGAACCGATGCAATGCCCTATATAAGCTCCCAAATTGACAATCTAGATTCCTGTGATGAAAATGGTCCTGGTGGACGTCCTAGAGCAATTGCAATGGATTGTGAAATGGTTGGTGGCGGGAGTGATGGATCGCTGGAAATTTGTGCTAGAGTATGCTTGGTTGATGAAGATGAGAATTTAATCTTCCACACATATGTACAGCCAATAATCCCTGTTACTAACTACAGATATGATATAACTGGGTTGACCGAAGAGAATCTTAGAAATGCTATGCCACTGAAGGAGGTTCAGGAAAAGGTATTGCAAATTCTATATAACGGAGAATCCACTGGCAAAGTTCTAGATGGGGGGAAGGCCAGGCTTCTGGTGGGGCATGACTTAGAACATGATTTTGATTGCTTGAAATTGAATTATCCCAAACACTTGCTGAGGGACACTGCAAAGTATCGACCATTGATGAAGACAAACTTGGTTAGCCATTCGCTCAAGTATCTTACCCGAACATATCTAGGTTATGATATCCAAAGCGGCGCTCATGACCCATATGAAGACTGTATCTCTGTGATGAGACTATATAAGAGAATCCGGGGTCAAATTCATAAGGAGGAAGGCTATGGAACATTGACTTCCAATAACAACATAGGCGAGTCTGATTGTTGGCAATCTGAGAAAGTAAGCAACCTCACACCAGATGAACTATATGCCATGTCAAGATCAGACTACAGATGTTGGTGTTTGGATTTGAGACCAAACTTGGCACCCTGA 1098 0.4262 MDSEADPPETENPPKRHKCSACYKQYKKKEHLIEHMKISYHSLHQPRCGVCQKHCKSFESLREHLTGPLPKGLCSTIFSQQGCQLCLSLFDSAVSLREHLETCRLSSPAPMGTDAMPYISSQIDNLDSCDENGPGGRPRAIAMDCEMVGGGSDGSLEICARVCLVDEDENLIFHTYVQPIIPVTNYRYDITGLTEENLRNAMPLKEVQEKVLQILYNGESTGKVLDGGKARLLVGHDLEHDFDCLKLNYPKHLLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGAHDPYEDCISVMRLYKRIRGQIHKEEGYGTLTSNNNIGESDCWQSEKVSNLTPDELYAMSRSDYRCWCLDLRPNLAP* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0006 365 Pfam Exonuclease 141 303 IPR013520 -
Amo18g0006 365 Gene3D Classic Zinc Finger 2 67 - -
Amo18g0006 365 SMART exoiiiendus 139 312 IPR013520 -
Amo18g0006 365 ProSitePatterns Zinc finger C2H2 type domain signature. 19 41 IPR013087 -
Amo18g0006 365 PANTHER EXONUCLEASE FAMILY PROTEIN 14 361 - -
Amo18g0006 365 Gene3D - 136 319 IPR036397 GO:0003676
Amo18g0006 365 CDD REX4_like 141 304 IPR037431 GO:0006364|GO:0008408
Amo18g0006 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 17 46 IPR013087 -
Amo18g0006 365 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 14 361 - -
Amo18g0006 365 SUPERFAMILY Ribonuclease H-like 140 307 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0006 Amo-Chr18 399879 403171 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0006 1 362 C2H2 Transcription Factor Family AT2G48100 54.945 2.49e-141 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0006 K18327 - gmx:100805841 602.823