Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0002 ATGATGACGAAGACGCCGTCGCCGTCGCCGATGCGGCACCTGGTCTGCTTCCACTACGACTCTCGCTGCTTATCGAACTCCCCAGTCACCGCCATGAGCCGTTATGACAGCCGCGCCGCCGACCCAGCTTCCTATCGTGACCGGAGAAGCGATTCGGGGCTAGGAGCACCTCCGGCTTCAGCTTCAGCTTCAGCTTCTAGTAGAAGGGATTACGATGACGGTGGAAAGAATTTCTACCATGAATCGCCTTCCGTTAGGGCAATGACTGAGTCCGAGGTTGACGACTACCGTCTCCGCAGGGAAATCACCGTTGAAGGCCGTGACGTCCCCAAACCTGTCAAGTCCTTTCACGATGTTGGCTTTCCAGATCCTGGAGATGGACCAATTGTGTTAGTTTTGGCCCCAACTCGTGAACTTGCCGTCCAAATACAACAGGAGGCTACTAAATTTGGTGCATCATCAAGGATTAAGAGTACATGCATCTATGGTGGGGTTCCGAAGGGGCCTCAGGTGCGTGATCTCCAGAAAGGCGTTGAGATTGTAATTGCTACTCCCGGAAGGTTAATTGATATGCTTGAGTCAAATCATACTAACTTGCGGAGGGTCACATACCTAGTATTGGACGAAGCTGATAGGATGTTGGACATGGGGTTTGATCCTCAGATAAGGAAGATTGTCTCACAGATTCGTCCAGATCGTCAGACTCTGTACTGGAGTGCTACCTGGCCAAAGGAGGTTGAACAATTGGCAAGGCAGTTCCTTTATAACCCGTACAAAGTAATTATAGGTTCTTCAGATTTAAAAGCTAACCATGCCATACGACAATATGTTGACATTGTTCCTGAAAAGCAGAAATATGACAAATTGGTGAAGCTGCTGGAGGACATCATGGATGGCAGCCGAATACTGATATTCATGGATACCAAGAAGGGATGTGATCAGATCACTAGGCAGCTCCGCATGGATGGTTGGCCCGCACTATCAATTCATGGAGATAAAAGTCAAGCAGAAAGAGATTGGGTGCTCTCAGAGTTTAAATCTGGAAAGAGTCCAATAATGACTGCAACAGATGTTGCAGCTCGGGGTTTAGATGTGAAGGATGTGAAGTATGTGATAAATTATGACTTCCCGGGATCACTTGAAGATTATGTACATCGTATTGGTCGGACAGGGAGAGCTGGTGCAAAAGGAACTGCATACACGTTTTTCACAGCTGCTAATGCCAGATTTGCAAAGGAACTTATAACCATACTTGAGGAAGCTGGACAAAGAGTGAGCCCTGAATTGGCTGCAATGGGGCGTGGTGCACCTCCTCCACCATCAGGTCTGTTTACCGTGGACACTTGTATAACTTGGCTAACATATAACATTAGTTCCTTGCCCCAGCCGTTCTTTTTTGGTTTGAGTGCATCTCTTAGTTATTTCCGAATGGCACTTCTTGTTCCTTTGGTCCCTTGCCCTGGTCTGCCAAAATTGAACTTTACCATCATGCCATGGCAGTCTCTTAAGGATTCTATCCAAAATGCTTACTGTAGACATGCATCAGTTGTTCTCAAATTCTATCCTGGGCCGAGAGGCCTGGCCTGTTCATTAATATGCTTGATAACATGCTTTGCTTGTAGAATTTTGTTTCCGAGACCGAGGGAAGGGTTATGGCAGCAGTCGCCCGTGGAGCTAATCGATGGAGATGGCCAGGTCTTCAGCGACCCATTATTACTGTCCTTTTAA 1728 0.474 MMTKTPSPSPMRHLVCFHYDSRCLSNSPVTAMSRYDSRAADPASYRDRRSDSGLGAPPASASASASSRRDYDDGGKNFYHESPSVRAMTESEVDDYRLRREITVEGRDVPKPVKSFHDVGFPDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNPYKVIIGSSDLKANHAIRQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQRVSPELAAMGRGAPPPPSGLFTVDTCITWLTYNISSLPQPFFFGLSASLSYFRMALLVPLVPCPGLPKLNFTIMPWQSLKDSIQNAYCRHASVVLKFYPGPRGLACSLICLITCFACRILFPRPREGLWQQSPVELIDGDGQVFSDPLLLSF* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0002 575 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 206 214 IPR000629 -
Amo18g0002 575 Gene3D - 267 431 IPR027417 -
Amo18g0002 575 SMART helicmild6 313 394 IPR001650 -
Amo18g0002 575 Pfam Helicase conserved C-terminal domain 285 394 IPR001650 -
Amo18g0002 575 MobiDBLite consensus disorder prediction 35 92 - -
Amo18g0002 575 PANTHER ATP-DEPENDENT RNA HELICASE DDX17-RELATED 123 432 - -
Amo18g0002 575 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 126 260 IPR014001 -
Amo18g0002 575 PANTHER ATP-DEPENDENT RNA HELICASE DDX17-RELATED 69 121 - -
Amo18g0002 575 CDD SF2_C_DEAD 273 403 - -
Amo18g0002 575 Pfam DEAD/DEAH box helicase 126 249 IPR011545 GO:0003676|GO:0005524
Amo18g0002 575 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 288 433 IPR001650 -
Amo18g0002 575 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 123 432 - -
Amo18g0002 575 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 410 IPR027417 -
Amo18g0002 575 Gene3D - 122 266 IPR027417 -
Amo18g0002 575 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 69 121 - -
Amo18g0002 575 SMART ultradead3 28 276 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0002 Amo-Chr18 366755 370547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0002 131 414 Eukaryotic Initiation Factors Gene Family AT3G19760 36.620 5.61e-62 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0002 K12823 - thj:104815647 677.552