Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3158 ATGGATTCTGGGAATAGCGGAAGTATCTCCTCTAGTGGCGATGACGAATATGACGATGATTCACGTTCGCATTCACTCTTCCTCAATCCAAATCAAAATCCGCCAGATGCAAACTTCTTTTCTGCTTCTTCCTCTTCTGCTATTAATCTTCTTCCTTCTTCCACTACCTTCCCTCCACAATATTCATTCATAAATTTGGATACTAATCATTCTTCTTCTTCTTCCTCCTCCTCACAAAGATTACTATCCATTCAACCACCCCCAACCCCAATCCTACCTTCTTCTTCATCTTCCTCTTTATTTCTTCAACCTGCACCACCACCGCCACCACCACCAACAACAACTACTATCGGTGTTGCTCATCATCGGAACGCTAACACTAAGAAGAGAAGCAGAGCTTCAAGGCGAGCGCCAACCACCGTTCTCACCACCGACACAACCAACTTCAGATCCATGGTTCAGGAATTCACCGGCATCCCTTCTCCGCCCTTCTCCTCCGCCTTCTCTCGCCGCCTCGACCTTCTTGCAACCTCCGCTTCCCTCCGCTCATCATCAGGAGTCATCCCTCACATGGACTTCCACCCTCTAACACGCACTTTCGCACAAAGCCAAAGCCCAAGCCCAAACCCAAGCCCAAACCCAAACCCGCTATTATTCCATCATCACAATCACACTAGCAGCATGCTTGATGCTATGGCTTCCACTACCACCGCCTCCAACAACCCCCTTAACTTCCATCTACCCCCTGATCTTGCTTTACCCTATCACCACATGAATCTAACCATGCAAAACAACAACCCTACCACCACTACTACCACTCCTTTCAACAATGTTCCTGCAGGGTTTGCTCCTAAGTCTCAAGCAAGTCTATCCATGGCGGCATCGCTTCATCAGGATCTTCATCAGCCGCCGAACAATAATAACAATAATGCGCAACTGATGCTACCACCGGATCAAGAACATGTAGCTTCCGATGAGGGTATCCCAAGCCATGATGGTAGAATAATTAGGTCTTTACATGGAAATAAGGTAGCTTATTAG 1041 0.4736 MDSGNSGSISSSGDDEYDDDSRSHSLFLNPNQNPPDANFFSASSSSAINLLPSSTTFPPQYSFINLDTNHSSSSSSSSQRLLSIQPPPTPILPSSSSSSLFLQPAPPPPPPPTTTTIGVAHHRNANTKKRSRASRRAPTTVLTTDTTNFRSMVQEFTGIPSPPFSSAFSRRLDLLATSASLRSSSGVIPHMDFHPLTRTFAQSQSPSPNPSPNPNPLLFHHHNHTSSMLDAMASTTTASNNPLNFHLPPDLALPYHHMNLTMQNNNPTTTTTTPFNNVPAGFAPKSQASLSMAASLHQDLHQPPNNNNNNAQLMLPPDQEHVASDEGIPSHDGRIIRSLHGNKVAY* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3158 346 Pfam VQ motif 136 163 IPR008889 -
Amo17g3158 346 PANTHER VQ MOTIF-CONTAINING PROTEIN 1 310 IPR039609 -
Amo17g3158 346 MobiDBLite consensus disorder prediction 1 42 - -
Amo17g3158 346 MobiDBLite consensus disorder prediction 24 42 - -
Amo17g3158 346 PANTHER VQ MOTIF-CONTAINING PROTEIN 1 310 - -
Amo17g3158 346 MobiDBLite consensus disorder prediction 59 139 - -
Amo17g3158 346 MobiDBLite consensus disorder prediction 59 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3158 Amo-Chr17 136027032 136028386 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3158 - - aip:107607871 493.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g3158 17 136027032 136028386 Amo07g1685 07 47827849 47832761 hybridization
Amo17g3158 17 136027032 136028386 Amo08g1025 08 17541908 17545421 PCT
Amo17g3158 17 136027032 136028386 Amo17g1476 17 51552493 51557615 PCT
Amo08g1025 08 17541908 17545421 Amo17g3158 17 136027032 136028386 PCT
Amo17g1476 17 51552493 51557615 Amo17g3158 17 136027032 136028386 PCT