Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3147 ATGGCGGAGGCGCTTCGACGAGGTCGCTCTCTGGCTGAGACGCCAACATATTCAGTTGCTTCCGTTATTACTGTTATGGTCTTCGTCTGCTTCGTCGTTGAGCGCTCCATCTACCGCTTTGGAAAGTGGTTGAAGAAGACAAGAAGGAAGGCTCTCTTTGCATCACTGGAAAAGATTAAGGAAGACCTTGACACGAACCAGAATCTCATGCCCGAAGGTTCATCCTTTTCCCCTGATGAAACTGATATTCCAAAGGGACTAATTAGTGGTCCATTCAATCAATGCCCTGTGGGGCACGAGCCATTTGTTTCATATGAGGGTCTTGAGCAGCTGCACTGGTTCTTGTTTGTTCTTGGGATCACTCATGTTCTATACAGTTGTCTGGCAGTCGGTTTGGCATTGAGCAAGATTTATAGTTGGCGCAGATGGGAAAATCAGACCACAGTTGCAACAGACGGAAATCTGCAAGTTCTTCCCCCCGAATTGAGACCCATTATTCAAATCGATGGGGGAAAACTAATGAGCTCAGATATTAATGAACTCTATCGAAGAGTTATCTATCGGAACAATACTCTTATCGATCTATTAACAACAAGTAGATCTACGCCAAGCGAATTAGTAATGTGCCAGGAGAAATTGGTACAAGAAGCCGTGGATACGCTTCTGGATAATGGAATCCGCGGGCAACCGATGAGGGATGGTCATAATAAGGTTTACAAATCATTTTCAGATATAATTGAAGGTAAAGAGGGAAGATTTCGCGAAACCCTGCTTGGAAAAAGGGTTGATTATTCGGGGCGTTCTGTTATTGTAGTAGGACCATCACTTTCATTACATCGATGTGGATTACCTCGCGAAATAGCAATAGAACTTTTCCAGACATTTGTAATTCGTGGTCTAATTCGAAAGCATTTTGCTTCGAACATGAGAATTGCTAAGAGTAAAATTCGGGAAAAAGAACCGATTGTATGGGAAATCCTTCAAGAAATTATGCAGGGGCATCCCGTCTTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATACAGGCATTCCAACCTATTTTAGTGGAAGGGCGCGCTATTTGTTTACACCCATTAGTTTGTAAGGGATTCAATGCAGACTTTGATGGAGACCAAATGGCTGTTCATGTGCCTTTATCTTTGGAAGCCCAAACGGAAGCTCGTTTACTTATGTTTTCTCATATGAACCTATTGTCTCCGTCGATGGGAGATCCTATTTCTGTACCGACTCAAGATATGCTTATTGGGCTTTATATATTAACGAGCGGGAATCGTCGAGGTATTAGTGCAAACAGCGAGCTAATTGGATTGTTTCGAGCTAAACGAGCGGGACGTGCCTTAGAAGAAGTAATTTGTTACCGAGCTCTATTATTGGGAATAACAAAAACATCTTTGAATACCCAAAGTTTCATATCCGAAGCGAGTTTTCAAGAAACTACTAGAGTTTTAGCAAAAGCTGCTCTCCGAGGTCGTATCGATTGGTTGAAAGGTCTGAAAGAGAACGTTGTTTTGGGAGGAATGATACCCGTTAGTACCGGATTCAAAAGGCAAGAGGAGTATACCGCTCTTAGAGAATGTATCACTTTGGGAATTCCAACGATTTGTTTAATCGATACAAATTGTGACCCCGATCTCGCGGATATTTCGATTCCAGTTAATGATGATGCTATAGCTTCAATTCGGAAAGAGAAACAAGGTGATGAGGCGGCAGATAACCTTTGTTTTTCATCATGCTTCACATCCATGGAGCAGGAATCCAATACTCATCTGGATGGTGATATATCATCAACACTTTATAGCTTCATATCCTTAATTTTTATTTGCAAGCTTGCTTTTTCATCCTCATGGCTGATAATTTGTGGTGTCAATTTGGGTTTCATAACTGAGCACAAATTGCCACTGTCATATAATTCCATCAATATATGGTTCGAAGCATGGAAGATGAATTTCATGGCATTCTAG 1986 0.4179 MAEALRRGRSLAETPTYSVASVITVMVFVCFVVERSIYRFGKWLKKTRRKALFASLEKIKEDLDTNQNLMPEGSSFSPDETDIPKGLISGPFNQCPVGHEPFVSYEGLEQLHWFLFVLGITHVLYSCLAVGLALSKIYSWRRWENQTTVATDGNLQVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPSELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRKHFASNMRIAKSKIREKEPIVWEILQEIMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPSMGDPISVPTQDMLIGLYILTSGNRRGISANSELIGLFRAKRAGRALEEVICYRALLLGITKTSLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGMIPVSTGFKRQEEYTALRECITLGIPTICLIDTNCDPDLADISIPVNDDAIASIRKEKQGDEAADNLCFSSCFTSMEQESNTHLDGDISSTLYSFISLIFICKLAFSSSWLIICGVNLGFITEHKLPLSYNSINIWFEAWKMNFMAF* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3147 661 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA' 150 434 - -
Amo17g3147 661 Gene3D - 479 520 - -
Amo17g3147 661 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 442 524 - -
Amo17g3147 661 Pfam Mlo family 9 63 IPR004326 GO:0006952|GO:0016021
Amo17g3147 661 Pfam Mlo family 87 149 IPR004326 GO:0006952|GO:0016021
Amo17g3147 661 Pfam Ribosomal protein S2 524 569 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo17g3147 661 Pfam RNA polymerase Rpb1, domain 2 311 399 IPR000722 GO:0003677|GO:0003899|GO:0006351
Amo17g3147 661 Pfam RNA polymerase Rpb1, domain 2 259 310 IPR000722 GO:0003677|GO:0003899|GO:0006351
Amo17g3147 661 Gene3D - 285 329 - -
Amo17g3147 661 Gene3D - 521 570 - -
Amo17g3147 661 Gene3D - 247 400 - -
Amo17g3147 661 PANTHER DNA-DIRECTED RNA POLYMERASE 150 434 IPR045867 GO:0003899|GO:0006351
Amo17g3147 661 SMART rpolaneu7 154 429 IPR006592 GO:0003677|GO:0003899|GO:0006351
Amo17g3147 661 Pfam RNA polymerase Rpb1, domain 1 155 257 IPR007080 GO:0003677|GO:0003899|GO:0006351
Amo17g3147 661 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 154 432 - -
Amo17g3147 661 PRINTS Ribosomal protein S2 signature 533 544 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo17g3147 661 PRINTS Ribosomal protein S2 signature 554 568 IPR001865 GO:0003735|GO:0005840|GO:0006412
Amo17g3147 661 SUPERFAMILY Ribosomal protein S2 524 569 IPR023591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3147 Amo-Chr17 135847175 135857458 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g3147 1 156 MLO family AT1G11000 49.744 1.37e-50 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3147 K03046 - gmx:3989292 545.043