Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3134 ATGGCATATCCGCATTACCGGCCACATCAGTTCGGAGACACCACATTCACCAAACTCTTCGTTGGAGGCTTAGCTTGGGAGACTCCAACTGAAGAACTCAGAAAGTACTTTGACCAGTTCGGTGAAATCCTTGAAGCCGTTATCATCACTGATAAGAACACAGGAAAATCCAAAGGCTACGGTTTCGTAACGTTCCGCGATCAAGAATCAGCAAGGAGAGCATGTGCTGATCCAAACCCAGTCATTGATGGAAGAAGAGCGAATTGCAATATTGCTTCTCTTGGCAGGACTCGACCATCACCACCCCGAGGCAGGAACTATATGGTTCAAGGAGGAGGAGCAGCACAACAGGGTGGTGCGGCAGGGGCGTCGTACGGCGGTGTTCCGGCGGGAGCAGGACCGTCATCATTGGGAGCAGCACCACCACTAATGTACCCGCCACCGTATGGCTACCCAACCTACACTCCTGAATACGGGTACCACCACCAAGCGACATTGTACACCCCACAGATGCAGCAAGCGCAATATTATCATCATCAGCAACAACAAATATATGGATCACCATCATCCGCTATGGGATCACCATATTACTATGGTGGTTACTCAATGCAAGCACCAAGAAGCACATTACTTTCTTCACCGCAGCATGCAAATCGCTTACCACCACCAGCTGCAGCTGCCGGACCCTCCTATGTATACTACCCTACCACACCAATGGAACCCTCCTCCTTCACTCCTTACCATCATCATCCTCTCCAACAACCAACGATAAGGCATCCCTTTCCATCTCCTACTGATCTACAAACTCAGCAGCAGCAACGAACATCATCATCATCAACTGAAACAGCAGCAGCTGGAGGAGTAGTTATAACTTCATCAGAAAGTTCGAATACCCAGCAAGGGAAGAAGAATAACTAA 918 0.4913 MAYPHYRPHQFGDTTFTKLFVGGLAWETPTEELRKYFDQFGEILEAVIITDKNTGKSKGYGFVTFRDQESARRACADPNPVIDGRRANCNIASLGRTRPSPPRGRNYMVQGGGAAQQGGAAGASYGGVPAGAGPSSLGAAPPLMYPPPYGYPTYTPEYGYHHQATLYTPQMQQAQYYHHQQQQIYGSPSSAMGSPYYYGGYSMQAPRSTLLSSPQHANRLPPPAAAAGPSYVYYPTTPMEPSSFTPYHHHPLQQPTIRHPFPSPTDLQTQQQQRTSSSSTETAAAGGVVITSSESSNTQQGKKNN* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3134 305 MobiDBLite consensus disorder prediction 244 305 - -
Amo17g3134 305 PANTHER GEO13361P1-RELATED 1 285 - -
Amo17g3134 305 PANTHER - 1 285 - -
Amo17g3134 305 SUPERFAMILY RNA-binding domain, RBD 6 119 IPR035979 GO:0003676
Amo17g3134 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 94 IPR000504 GO:0003723
Amo17g3134 305 CDD RRM_RBM24_RBM38_like 17 92 - -
Amo17g3134 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 76 IPR000504 GO:0003723
Amo17g3134 305 Gene3D - 4 113 IPR012677 -
Amo17g3134 305 SMART rrm1_1 18 90 IPR000504 GO:0003723
Amo17g3134 305 MobiDBLite consensus disorder prediction 259 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3134 Amo-Chr17 135631625 135636937 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g3134 13 93 C2H2 Transcription Factor Family AT2G19380 40.741 1.74e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3134 K25006 - gmx:100788516 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g3134 17 135631625 135636937 Amo17g3134 17 135631625 135636937 ECH
Amo17g3134 17 135631625 135636937 Amo17g3134 17 135631625 135636937 PCT