Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3129 ATGGATGATTCTTCAGCGCATAGAGATCGCAGGCCAGAAGCACTCGGAGACCTTGGGGTCCTTCCCGATGAAACCCTCTGCTCAATCTTAGAGTCTCTCTCTCCCCGCGACGTTGCTCGCCTTGCCTGCGTTAGCAGTGTCATGTACGTGTTGTGCAATGAGGAACCACTGTGGATGAGTCTATGCCTTAAAGGGGCATCTGGTTTGCTTCAGTACCAAGGCTCTTGGAAGAAAACTACCCTGCTGCATAATGAGAATCTGCCAGACAAATACAAAGAGTATCAACCACGACTACTATACTTTGATGGGTTCAACTCTTTATTTTTGTACAGGAGATTATACCGATGTCATACCACATTGGAGTCGTTTCATGCAGATGATGGAAATGTGGAAAGAAGGAAAGACCTATCCTTGAAGGATTTCTATGACCAGTATGATGCAAAGAAACCGGTTATGCTTACTGGATTGGCTGAGACATGGCCTGCCAGGCATAAATGGACAACTGATCAGCTGTTGCAAAACTATGGAGACGTAGCATTTAAAATTTCCCAAAGGAGTTCTCGGAAGGTCTCCATGAAATTCAAGGATTATGTCTCATACATGGAAGTTCAGCATGATGAAGATCCCTTATATATTTTTGATGAAAAGTTTGGTGAAGTTGCACCTAGCTTATTGAAGGATTATTCTGTACCTCATCTTTTTCAAGAAGACTTCTTTGATATCTTAGATGCTGAACAAAGACCATCCTATAGGTGGCTAATAATTGGACCACAGAGATCTGGTGCCTCTTGGCACGTTGATCCAGCTCTTACTAGTGCATGGAATACTCTTCTTTCTGGCCGTAAAAGGTGGGCATTATATCCTCCAGGAAAGGTGCCTTTGGGTGTGACAGTGCATGTTAACGAAGAAGATGGTGATGTCAATATTGAGACCCCGTCATCACTTCAGTGGTGGTTGGACTATTATCCTCTCCTTCCCGATGAAGACAAGCCAATTGAGTGTACACAACTACCAGGGGAGACAATTTACGTTCCAAGTGGATGGTGGCACTGTGTTTTAAATTTAGAAACAACTATCGCTGTCACTCAGAATTATGTGAATTCAAATAATTTTGAATTTGTATGTTTGGACATGGCTCCTGGTTATCGTCATAAAGGAGTTTGTCGTGTTGGATGGCTTGCTTTAGATGAAGAAACTTATGAAAATGTCAGACAGAGCACGGCATGTTATTCTGATTTGTCTAGGAAAGAGAAAAGAGCCAAAACTATCAAAGATGTAGATAATCTAAATTCTGAAAGTACCGTAAATGGCGCATCTAGGAACTATGGTTTATGGAAAGATGGATTTTCCTATGATATAGAGTTCTTATCCATATTCTTGGATAGAGATAGAGACCATTACCTTTCCCCGTGGAGCGTAGGCAACAGCATTGGTCAACGAGAACTAAGAGAATGGTTGTCGAAGCTTTGGATTCAAAAACCACAAATGAGAGAGCTTATATGGAAGGGGGCATGTATTGCCTTAAATGCTGACAAGTGGTTGGAATGTGCATCAAAAATTTGTGCCATCCACAATTTGCCTCTTCCCAGTGACGATGAAAGGCTTCCAGTTGGCTCGGGTAGCAATCCTGTTTATCTAGTGGGGAACTCTGTTGTTAAGATTTTTGTTGAAGGAGGACTGGAAGCTTCTCTTTATGGTTTCGGCACAGAGCTAGAGTTTTACAGGCTACTTCATGAAATCAACTCCCCTCTCAAGAAACATATTCCTAGTATTTTGGCCAATGGGATCATTTATGTTGAAGATGGATCTTTTAACAATTTAACTTGGGATGGAAAAGGAGTCCCTGACATCATTTCAAAGAGCAATCTCATCAAGACAAAATGTGATGTTCATGGTTTCTCATTTGGGGTATGGGGCAAGAAACAACTTGAGTATAAGAATGCTGGGATGGAAATGGATGGATCGGATAGTTTAGCAGGTCACTCAAGTATATGGCCATATATGATAATAAGACGATGTGAAGGGAAAATGTTTGCAGATTTAAGAGACACACTGTCATGGGAAGATGCAACAAACTTGGCCTCCTTCTTAGGGGAGCAGCTGAACCACCTTCATCTCTTACCACATCCACCTTTGAATATTTCATCTTTAACAGATATTGAACATGAATTGAGCTTTACTGGAACCGATGGTTGTGGTGCAACTGTTAATTATAAATCAAATACTGCAGCAGAATGGGGAGTCTTCCTAAGAAACTTAACAATGATGCGGAAGAATGTTTCAAGCCGTTTGACCAAGTGGGGAGATCCAATCCCTAGCAGTTTGATAGAGAAAATTGATGAATATGTCCCGCCTGATTTTGCTAAGCTGCTAAACATAATTGAGAATCTCCCAAGGGGTGCTTGTAAACCTTGCTCTTGGATTCACTCTGATATTATGGATGATAACATTTACATGGAACCATCTTCGGCTTATTCTATCTCAAGTGGGAATGCAGAAGATGCTGCCAAGGTAAATGGTCATTTGAGCAGCTATGATGAAGTGAAATCCTGGCGTCCTAGTTATATCCTTGATTTCAGTGATCTTTCAATAGGTGATCCGCTGTTTGACTTGATACCAATTTATTTAGATGTCTTTAGAGGTGATTCAGATCTCCTTAAGCGATTTTTAGAAAGCTATAAACTTCCTTTTGCAAGTCCCATATCAAAGTACGAGTCAACAGATGGTGGTCAGAAGTATGCCCGACTTTCATATGTTGCCATGTGCTATTGTATTTTGCATGATGAGAATGTGTTGGGAGCTATTTTTACTATATGGAAAGAATTGAGATCAGCAAAGTCATGGGAAGAAGTTGAGCTAACAGTGTGGGGCGAGTTGAACAATTACAATGGCTTTCCTTGA 2901 0.4109 MDDSSAHRDRRPEALGDLGVLPDETLCSILESLSPRDVARLACVSSVMYVLCNEEPLWMSLCLKGASGLLQYQGSWKKTTLLHNENLPDKYKEYQPRLLYFDGFNSLFLYRRLYRCHTTLESFHADDGNVERRKDLSLKDFYDQYDAKKPVMLTGLAETWPARHKWTTDQLLQNYGDVAFKISQRSSRKVSMKFKDYVSYMEVQHDEDPLYIFDEKFGEVAPSLLKDYSVPHLFQEDFFDILDAEQRPSYRWLIIGPQRSGASWHVDPALTSAWNTLLSGRKRWALYPPGKVPLGVTVHVNEEDGDVNIETPSSLQWWLDYYPLLPDEDKPIECTQLPGETIYVPSGWWHCVLNLETTIAVTQNYVNSNNFEFVCLDMAPGYRHKGVCRVGWLALDEETYENVRQSTACYSDLSRKEKRAKTIKDVDNLNSESTVNGASRNYGLWKDGFSYDIEFLSIFLDRDRDHYLSPWSVGNSIGQRELREWLSKLWIQKPQMRELIWKGACIALNADKWLECASKICAIHNLPLPSDDERLPVGSGSNPVYLVGNSVVKIFVEGGLEASLYGFGTELEFYRLLHEINSPLKKHIPSILANGIIYVEDGSFNNLTWDGKGVPDIISKSNLIKTKCDVHGFSFGVWGKKQLEYKNAGMEMDGSDSLAGHSSIWPYMIIRRCEGKMFADLRDTLSWEDATNLASFLGEQLNHLHLLPHPPLNISSLTDIEHELSFTGTDGCGATVNYKSNTAAEWGVFLRNLTMMRKNVSSRLTKWGDPIPSSLIEKIDEYVPPDFAKLLNIIENLPRGACKPCSWIHSDIMDDNIYMEPSSAYSISSGNAEDAAKVNGHLSSYDEVKSWRPSYILDFSDLSIGDPLFDLIPIYLDVFRGDSDLLKRFLESYKLPFASPISKYESTDGGQKYARLSYVAMCYCILHDENVLGAIFTIWKELRSAKSWEEVELTVWGELNNYNGFP* 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3129 966 Gene3D Cupin 111 367 - -
Amo17g3129 966 SUPERFAMILY F-box domain 7 68 IPR036047 GO:0005515
Amo17g3129 966 SUPERFAMILY Protein kinase-like (PK-like) 665 896 IPR011009 -
Amo17g3129 966 Pfam Cupin-like domain 147 369 IPR041667 -
Amo17g3129 966 Gene3D - 14 92 - -
Amo17g3129 966 SMART cupin_9 210 377 IPR003347 -
Amo17g3129 966 Pfam F-box-like 21 64 IPR001810 GO:0005515
Amo17g3129 966 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 4 899 - -
Amo17g3129 966 PANTHER JMJC DOMAIN-CONTAINING PROTEIN 8 4 899 - -
Amo17g3129 966 ProSiteProfiles JmjC domain profile. 219 382 IPR003347 -
Amo17g3129 966 ProSiteProfiles F-box domain profile. 15 61 IPR001810 GO:0005515
Amo17g3129 966 SUPERFAMILY Clavaminate synthase-like 118 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3129 Amo-Chr17 135392736 135402580 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g3129 6 962 Glycosyltransferase AT1G78280 60.740 0.0 1212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Amo17g3129 Cupin_8 8.3e-24 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3129 - - gmx:100792541 1645.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g3129 17 135392736 135402580 Amo17g3129 17 135392736 135402580 ECH