Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3100 ATGGCGCTACTCTCTAGTCTTTGCATTCCTTCAACCACGCACCTCTCTACGCACAACCATTCTTTCTCATCATCCTCCAACATTCACATCCATTCCATCACCACCATCAATCCATTCTCTTCCTTTCAACCCCTGCAATTATCACTTCCTCATCACACCCCAACACTCCTCACAACCAAACAAAACCCTAATTTCACTCTCAGATTTTCCCAACAGGCTCAGGCTGAGGCTGAAGCAGCACCTAGTGTCTCCACCGACGAACATGCAGCGCAAGAGGTTTCCCAGACGAGGTTGCTCGCCCAGAACGTGCCATGGACAAGCACCCCTGAAGACATTCGTTCTTTGTTCGAGAGATATGGAAAAGTGCTCCAAGTTGAGCTCTCAATGTATAACAAGACGAAGAACAGGGGTTTGGCATTTGTGGAAATGAGTTCACCAGAAGAGGCTCGTGCCGCTCTCCAGAATCTCGAATCGTATGAGTTTGATGGCCGGATATTAAAACTCAATTACGCTCATATAAAGAAGAAGAAAACTCCACCACCCGTGAAACCAAAGCCTGTGACATTTAACTTGTTTGTTGCAAACTTGCACTATGAAGCAAGGTCTAAAGATCTCAAGGAATTTTTTGATGATGGAAGTGGTAGCATTGTTTCTGCAGCAGTTATATTTCATGATAACCCTAGAAGGTCATCTGGCTATGGTTTTGTGGCCTTCAAATCCAAGAAACAAGCTGATTCAGCACTTAATGAGTTCCAAGGAAAGATCTTTATGGGAAGACCAATCAGGGTAGCTCGTGGTAGGCAATTTGTTAAAGAACGAGCAAAGGAGAGTGAAACATCCGAAGATACGGCTTCTGAGTTGAATGGTGAAGAAGCTGACAAGGCTGATTGA 891 0.4478 MALLSSLCIPSTTHLSTHNHSFSSSSNIHIHSITTINPFSSFQPLQLSLPHHTPTLLTTKQNPNFTLRFSQQAQAEAEAAPSVSTDEHAAQEVSQTRLLAQNVPWTSTPEDIRSLFERYGKVLQVELSMYNKTKNRGLAFVEMSSPEEARAALQNLESYEFDGRILKLNYAHIKKKKTPPPVKPKPVTFNLFVANLHYEARSKDLKEFFDDGSGSIVSAAVIFHDNPRRSSGYGFVAFKSKKQADSALNEFQGKIFMGRPIRVARGRQFVKERAKESETSEDTASELNGEEADKAD* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3100 296 SMART rrm1_1 97 169 IPR000504 GO:0003723
Amo17g3100 296 SMART rrm1_1 190 264 IPR000504 GO:0003723
Amo17g3100 296 CDD RRM_SF 191 263 - -
Amo17g3100 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 166 IPR000504 GO:0003723
Amo17g3100 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 262 IPR000504 GO:0003723
Amo17g3100 296 Gene3D - 57 176 IPR012677 -
Amo17g3100 296 PANTHER OS08G0483200 PROTEIN 1 293 - -
Amo17g3100 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 268 IPR000504 GO:0003723
Amo17g3100 296 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 1 293 - -
Amo17g3100 296 CDD RRM_SF 102 169 - -
Amo17g3100 296 Gene3D - 177 294 IPR012677 -
Amo17g3100 296 MobiDBLite consensus disorder prediction 270 296 - -
Amo17g3100 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 173 IPR000504 GO:0003723
Amo17g3100 296 SUPERFAMILY RNA-binding domain, RBD 96 265 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g3100 79 263 Eukaryotic Initiation Factors Gene Family AT3G16380 31.633 2.00e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3100 - - lang:109340717 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g3100 17 135011673 135014309 Amo17g3100 17 135011673 135014309 ECH