Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3098 ATGGCACTAGAGGCTGTGGTTTTTCCACAAGATCCATTATTCTCATATGCTTCTTCTACCACCACCACCAAGGATTATTTCTACTCATCCTTTCTCGGCAGCCACCACCACGATCTCATCGGAATTATAAACAACAACATCATTCAACAAAACCAAGCAACTAACAATTCCGACTCTTCTTCTCCTCCTTCCAACAACGACCACTGGGATCATTCTCACTACGCCACTTCTTCCAGCTCCCCTGACTGCTGCGCTGCCACTGTTGATCAACCTTCTGTCCCCACCACCACTGGCCGCCGCAAACGCCGCCGCACCAAAACCACCAAGAACAAGGAGGACATCGAGAACCAGAGGATGACTCACATTGCTGTTGAACGCAACCGCCGCAAACAGATGAACGACTACCTCGCCGTCCTTCGTTCTTTGATGCCTCCTTCTTATGTTCAAAGAGGTGACCAAGCGTCTATTATTGGAGGCGCCATTAACTTTGTGAAGGAGCTAGAGCAGCTTTTGCAGTCCATGGAGGGTCAAAAGAAACCCAACCACCACGACACTACTGCTGCTGGTGGCGCCGCCGGAATGAATAGTAGTGGCCAATCATCGCCGTTTGGCGAATTCTTCGCGTTTCCGCAGTACACAACGCGTGGTCATCATCAGGGAAACAACAACGCAACGACGATGGCAGCGGAGCAGCAACAGAAACAGTGGGCGCCGGCGGTGGCGGACATAGAAGTGACAATGGTGGACAGCCATGCGAACCTCAAGATTCTATCAAAGAAACGACATGGGCAGCTGATGAAGATGGTTGTTGGTCTCCAATCTCTAAGCCTCACCATTCTCCACCTTAATGTTACCACTCTCCATGACTTCGTCCTTTACTCTGTTAGCGTAAAGGCAGAGGATGGGTGCCAGCTGAATACGGTGGATGAAATAGCTGCTGCTGTGAATCAACTATTATGCGCAGTTCAACAAGAGGCATCATCTTTCAACGAAATTAATTAG 1002 0.496 MALEAVVFPQDPLFSYASSTTTTKDYFYSSFLGSHHHDLIGIINNNIIQQNQATNNSDSSSPPSNNDHWDHSHYATSSSSPDCCAATVDQPSVPTTTGRRKRRRTKTTKNKEDIENQRMTHIAVERNRRKQMNDYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQSMEGQKKPNHHDTTAAGGAAGMNSSGQSSPFGEFFAFPQYTTRGHHQGNNNATTMAAEQQQKQWAPAVADIEVTMVDSHANLKILSKKRHGQLMKMVVGLQSLSLTILHLNVTTLHDFVLYSVSVKAEDGCQLNTVDEIAAAVNQLLCAVQQEASSFNEIN* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3098 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 167 IPR011598 GO:0046983
Amo17g3098 333 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 327 - -
Amo17g3098 333 CDD bHLH_AtFAMA_like 119 187 - -
Amo17g3098 333 PANTHER MAX DIMERIZATION, MAD 1 327 - -
Amo17g3098 333 MobiDBLite consensus disorder prediction 52 95 - -
Amo17g3098 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 183 IPR036638 GO:0046983
Amo17g3098 333 MobiDBLite consensus disorder prediction 175 198 - -
Amo17g3098 333 MobiDBLite consensus disorder prediction 52 113 - -
Amo17g3098 333 Pfam Helix-loop-helix DNA-binding domain 117 168 IPR011598 GO:0046983
Amo17g3098 333 SMART finulus 122 173 IPR011598 GO:0046983
Amo17g3098 333 Gene3D - 104 183 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3098 Amo-Chr17 134983370 134985755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g3098 1 298 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 52.104 2.62e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo17g3098 HLH 3.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3098 - - gmx:100789380 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g3098 17 134983370 134985755 Amo17g3098 17 134983370 134985755 ECH
Amo17g3098 17 134983370 134985755 Amo07g1775 07 52455648 52458591 hybridization
Amo17g3098 17 134983370 134985755 Amo17g3098 17 134983370 134985755 PCT
Amo07g1775 07 52455648 52458591 Amo17g3098 17 134983370 134985755 PCT
Amo17g3098 17 134983370 134985755 Amo07g1775 07 52455648 52458591 PCT