Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3094 ATGTCAACCACCCATACCCAAACACGCCACCATGGCCTTCTCGCCGCGATGCTGCTCCTCCTCCACCTGCTCCTTCCGCCGCCTCATACCGCCGCGCAGGCCGTTAACTCGCTGCCGCCTCCGCCGCCAGATGCCATCTCCAAGGTGAAGTTCGACAAGTCCATGGCCGTCGTCCTGGTCATCCTCGTCATCGTGTTCTTCGCCCTCGGCTTCCTCTCCGTGTACACGCGCCAGTGCGCGGAGCGTAGGATGAGAGCGAGGTTCGACCTCACGTTCCCCCTCGCCGGAAGCCACCGCCGGCAGCGTGGTTTGGACCGGGAGATCATCGAGACGTTCCCGACGTTTGTTTACTCCGCCGTGAAGACACAGAAGATAGGTCGTGCCACGCTAGAATGCGCCGTGTGCCTCAACGAGTTCAACGACGACGAAACGCTGCGTTTAATTCCAAAGTGCAGCCACGTGTTCCACCCTGATTGCATTGACGCATGGCTCGCTAACCACTCTACCTGCCCCGTTTGCCGCGCCAACCTCTTCCCCTCCGACAACAACAATAACGATAACGGCACCTTCGTTGACGTTCAGATCCCCGATCCTGAGTCCAACGGTTCACATAGATCCGAAATTGCACAGATTAATAACGGTAACGATAACGGCGGAGGAGGAACGGCAACGGTAACGGAGTCTCCGAAGATGGATAGTTCAGTTAATCAGAGGCGTACGCCGTTACGGTCATGGTCAACGGGGTTTAGGATTGGGAATTTGTTTCCAAGGTCGCACTCGACGGGTCACTCGCTGGTCCAACCGGGGGAAAGCTTGGAGCGGTTTACGCTGAGGCTGCCGGAGGAGGTGCGAAACCGGCTGCTTATGAGTTCGACGCCATGTCAGACGACAAGCAACGGCGGCGCGGCGTTCTCTCGAGAGAGCAGCGTGAGGAGAGGGTTTAGAACCCGGAGTGTGGGTCCCGGGAGGGGCTACTTGCAGTATGAACGGTTTGGCGGGGTGGAGCGGCGAGGGTTCAATTGGACGCCGGCGTTTTTTAGTAGGGCCAGTTCTACCCGGTCTCCGGGGAACGGTTCGACGGCGGAGGAGAAGAAGGAGGTGGCGGTGGAAATTGGTGAACGGTCTTCGGATCGGTTATTTGCAGGTGGTGAGAGTTAG 1158 0.5846 MSTTHTQTRHHGLLAAMLLLLHLLLPPPHTAAQAVNSLPPPPPDAISKVKFDKSMAVVLVILVIVFFALGFLSVYTRQCAERRMRARFDLTFPLAGSHRRQRGLDREIIETFPTFVYSAVKTQKIGRATLECAVCLNEFNDDETLRLIPKCSHVFHPDCIDAWLANHSTCPVCRANLFPSDNNNNDNGTFVDVQIPDPESNGSHRSEIAQINNGNDNGGGGTATVTESPKMDSSVNQRRTPLRSWSTGFRIGNLFPRSHSTGHSLVQPGESLERFTLRLPEEVRNRLLMSSTPCQTTSNGGAAFSRESSVRRGFRTRSVGPGRGYLQYERFGGVERRGFNWTPAFFSRASSTRSPGNGSTAEEKKEVAVEIGERSSDRLFAGGES* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3094 385 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Amo17g3094 385 Pfam Ring finger domain 131 174 IPR001841 -
Amo17g3094 385 MobiDBLite consensus disorder prediction 347 385 - -
Amo17g3094 385 PANTHER RING FINGER DOMAIN-CONTAINING 15 300 - -
Amo17g3094 385 MobiDBLite consensus disorder prediction 359 385 - -
Amo17g3094 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 179 IPR013083 -
Amo17g3094 385 SMART ring_2 132 173 IPR001841 -
Amo17g3094 385 SUPERFAMILY RING/U-box 126 186 - -
Amo17g3094 385 MobiDBLite consensus disorder prediction 209 239 - -
Amo17g3094 385 CDD RING-H2_PA-TM-RING 131 174 - -
Amo17g3094 385 PANTHER RING-H2 FINGER PROTEIN ATL11 15 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3094 Amo-Chr17 134933094 134934251 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g3094 7 313 Rapid Response to Elicitors AT3G05200 40.432 4.02e-61 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3094 K10664 - gmx:100815982 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g3094 17 134933094 134934251 Amo17g3094 17 134933094 134934251 ECH
Amo17g1704 17 72481372 72484330 Amo17g3094 17 134933094 134934251 PCT
Amo17g3094 17 134933094 134934251 Amo17g1704 17 72481372 72484330 PCT