LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo17g3091	ATGTCAACCACCCAAACCCAAACACGCCACCATGGCCTTCTCGCCGCGATGCTGCTCCTCCTCCACCTCCTCCTTCCCCCGCCTCATACCGCCGCGCAGGCCGTTAACTCGCTGCCGCCTCCGCCGCCAGATGCCATCTCCAAGGTGAAGTTCGACAAGTCCATGGCCGTCGTCCTGGTCATCCTCGTCATCGTGTTCTTCGCCCTCGGCTTCCTCTCCGTGTACACGCGCCAGTGCGCGGAGCGTAGGATGAGGGCGAGGTTCGACCTCACGTTCCCCCTCGCCGGAAGCCACCGCCGGCAGCGTGGTTTGGACCGGGAGATCATCGAGACGTTCCCGACGTTTGTTTACTCCGCCGTGAAGACACAGAAGATAGGTCGTGCCACGCTAGAATGCGCCGTGTGCCTCAACGAGTTCAACGACGACGAAACGCTGCGTTTAATTCCAAAGTGCAGCCACGTGTTCCACCCTGATTGCATTGACGCATGGCTCGCTAACCACTCTACCTGCCCGGTTTGCCGCGCCAACCTCTTCCCCTCCGACAACAACAATAACGATAACGGCACCTTCGTTGACGTTCAGATCCCCGATCCTGAGTCCAACGGTTCACATAGATCCGAAATTGCACAGATTAATAACGGTAACGATAACGGCGGAGGAGGAACGGCAACGGTAACGGAGTCTCCGAAGATGGATAGTTCAGTTAATCAGAGGCGTACGCCGTTACGGTCATGGTCAACGGGGTTTAGGATTGGGAGTTTGTTTCCAAGGTCGCACTCGACGGGTCACTCGCTGGTCCAACCGGGGGAAAGCTTGGAGCGGTTTACGCTGAGGCTGCCGGAGGAGGTGCGAAACCGGCTGCTTATGAGTTCGACGCCATGTCAGACGACAAGCAACGGCGGCGCGGCGTTCTCGAGAGAGAGCAGCGTGAGGAGAGGGTTTAGAACCCGGAGTGTGGGTCCCGGGAGGGGCTACTTGCAGTATGAACGGTTTGGCGGGGTGGAGCGGCGAGGGTTCAATTGGACGCCACCGTTTTTTAGTAGGGCCAGTTCTACCCGGTCTCCGGGGAACGGTACGACGGCGGAGGAGAAGAAGGAGGTGGCGGTGGAAATTGGTGAACGGTCTTCGGATCGGTTATTTGCAGGTGGTGAGAGTTAG	1158	0.5855	MSTTQTQTRHHGLLAAMLLLLHLLLPPPHTAAQAVNSLPPPPPDAISKVKFDKSMAVVLVILVIVFFALGFLSVYTRQCAERRMRARFDLTFPLAGSHRRQRGLDREIIETFPTFVYSAVKTQKIGRATLECAVCLNEFNDDETLRLIPKCSHVFHPDCIDAWLANHSTCPVCRANLFPSDNNNNDNGTFVDVQIPDPESNGSHRSEIAQINNGNDNGGGGTATVTESPKMDSSVNQRRTPLRSWSTGFRIGSLFPRSHSTGHSLVQPGESLERFTLRLPEEVRNRLLMSSTPCQTTSNGGAAFSRESSVRRGFRTRSVGPGRGYLQYERFGGVERRGFNWTPPFFSRASSTRSPGNGTTAEEKKEVAVEIGERSSDRLFAGGES*	386

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo17g3091	385	ProSiteProfiles	Zinc finger RING-type profile.	132	174	IPR001841	-
	Amo17g3091	385	Pfam	Ring finger domain	131	174	IPR001841	-
	Amo17g3091	385	PANTHER	RING FINGER DOMAIN-CONTAINING	16	300	-	-
	Amo17g3091	385	MobiDBLite	consensus disorder prediction	359	385	-	-
	Amo17g3091	385	MobiDBLite	consensus disorder prediction	346	385	-	-
	Amo17g3091	385	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	94	179	IPR013083	-
	Amo17g3091	385	SMART	ring_2	132	173	IPR001841	-
	Amo17g3091	385	SUPERFAMILY	RING/U-box	126	186	-	-
	Amo17g3091	385	MobiDBLite	consensus disorder prediction	209	239	-	-
	Amo17g3091	385	CDD	RING-H2_PA-TM-RING	131	174	-	-

Showing 1 to 10 of 11 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo17g3091	Amo-Chr17	134903326	134904970	Dispersed/Proximal

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo17g3091	7	313	Rapid Response to Elicitors	AT3G05200	40.491	3.82e-61	200

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo17g3091	K10664		-	gmx:100815982	353.984

Showing 1 to 1 of 1 entries