Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3091 ATGTCAACCACCCAAACCCAAACACGCCACCATGGCCTTCTCGCCGCGATGCTGCTCCTCCTCCACCTCCTCCTTCCCCCGCCTCATACCGCCGCGCAGGCCGTTAACTCGCTGCCGCCTCCGCCGCCAGATGCCATCTCCAAGGTGAAGTTCGACAAGTCCATGGCCGTCGTCCTGGTCATCCTCGTCATCGTGTTCTTCGCCCTCGGCTTCCTCTCCGTGTACACGCGCCAGTGCGCGGAGCGTAGGATGAGGGCGAGGTTCGACCTCACGTTCCCCCTCGCCGGAAGCCACCGCCGGCAGCGTGGTTTGGACCGGGAGATCATCGAGACGTTCCCGACGTTTGTTTACTCCGCCGTGAAGACACAGAAGATAGGTCGTGCCACGCTAGAATGCGCCGTGTGCCTCAACGAGTTCAACGACGACGAAACGCTGCGTTTAATTCCAAAGTGCAGCCACGTGTTCCACCCTGATTGCATTGACGCATGGCTCGCTAACCACTCTACCTGCCCGGTTTGCCGCGCCAACCTCTTCCCCTCCGACAACAACAATAACGATAACGGCACCTTCGTTGACGTTCAGATCCCCGATCCTGAGTCCAACGGTTCACATAGATCCGAAATTGCACAGATTAATAACGGTAACGATAACGGCGGAGGAGGAACGGCAACGGTAACGGAGTCTCCGAAGATGGATAGTTCAGTTAATCAGAGGCGTACGCCGTTACGGTCATGGTCAACGGGGTTTAGGATTGGGAGTTTGTTTCCAAGGTCGCACTCGACGGGTCACTCGCTGGTCCAACCGGGGGAAAGCTTGGAGCGGTTTACGCTGAGGCTGCCGGAGGAGGTGCGAAACCGGCTGCTTATGAGTTCGACGCCATGTCAGACGACAAGCAACGGCGGCGCGGCGTTCTCGAGAGAGAGCAGCGTGAGGAGAGGGTTTAGAACCCGGAGTGTGGGTCCCGGGAGGGGCTACTTGCAGTATGAACGGTTTGGCGGGGTGGAGCGGCGAGGGTTCAATTGGACGCCACCGTTTTTTAGTAGGGCCAGTTCTACCCGGTCTCCGGGGAACGGTACGACGGCGGAGGAGAAGAAGGAGGTGGCGGTGGAAATTGGTGAACGGTCTTCGGATCGGTTATTTGCAGGTGGTGAGAGTTAG 1158 0.5855 MSTTQTQTRHHGLLAAMLLLLHLLLPPPHTAAQAVNSLPPPPPDAISKVKFDKSMAVVLVILVIVFFALGFLSVYTRQCAERRMRARFDLTFPLAGSHRRQRGLDREIIETFPTFVYSAVKTQKIGRATLECAVCLNEFNDDETLRLIPKCSHVFHPDCIDAWLANHSTCPVCRANLFPSDNNNNDNGTFVDVQIPDPESNGSHRSEIAQINNGNDNGGGGTATVTESPKMDSSVNQRRTPLRSWSTGFRIGSLFPRSHSTGHSLVQPGESLERFTLRLPEEVRNRLLMSSTPCQTTSNGGAAFSRESSVRRGFRTRSVGPGRGYLQYERFGGVERRGFNWTPPFFSRASSTRSPGNGTTAEEKKEVAVEIGERSSDRLFAGGES* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3091 385 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Amo17g3091 385 Pfam Ring finger domain 131 174 IPR001841 -
Amo17g3091 385 PANTHER RING FINGER DOMAIN-CONTAINING 16 300 - -
Amo17g3091 385 MobiDBLite consensus disorder prediction 359 385 - -
Amo17g3091 385 MobiDBLite consensus disorder prediction 346 385 - -
Amo17g3091 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 179 IPR013083 -
Amo17g3091 385 SMART ring_2 132 173 IPR001841 -
Amo17g3091 385 SUPERFAMILY RING/U-box 126 186 - -
Amo17g3091 385 MobiDBLite consensus disorder prediction 209 239 - -
Amo17g3091 385 CDD RING-H2_PA-TM-RING 131 174 - -
Amo17g3091 385 PANTHER RING-H2 FINGER PROTEIN ATL11 16 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3091 Amo-Chr17 134903326 134904970 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g3091 7 313 Rapid Response to Elicitors AT3G05200 40.491 3.82e-61 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3091 K10664 - gmx:100815982 353.984