Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3072 ATGACCACCTTCTCTGCGAAATTGAAGGCAACCACCTCTCCTCCGCCGCAATCATCGGCCAAGACGGCAGTGTTTGGGCTCAGAGCTCTAATTTCCCTCAGCATCAGCCTAAAACTCATTGCTGCACCATGTCCATACCGTTGTTACCTTGATGCTGGTTTTGGCCATTGGTTGTTAAAATCTCAGCTTGTCCTTGTCATGCAGGGTCCTGGTGGTGTTACCATTAAGAAGACGAATCAGGCGTTGATCATCGGAATCTACGATGAGCCGATGACTCCAGGGCAGTGCAACATGATTGTTGAAAGGCTGGGTGATTATCTCATTGATACGGGTCTTTAA 339 0.4838 MTTFSAKLKATTSPPPQSSAKTAVFGLRALISLSISLKLIAAPCPYRCYLDAGFGHWLLKSQLVLVMQGPGGVTIKKTNQALIIGIYDEPMTPGQCNMIVERLGDYLIDTGL* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3072 112 SUPERFAMILY Profilin (actin-binding protein) 63 111 IPR036140 -
Amo17g3072 112 Gene3D Dynein light chain 2a, cytoplasmic 54 112 - -
Amo17g3072 112 PRINTS Plant profilin signature 85 98 IPR005455 GO:0003779
Amo17g3072 112 PRINTS Plant profilin signature 65 80 IPR005455 GO:0003779
Amo17g3072 112 PRINTS Plant profilin signature 98 111 IPR005455 GO:0003779
Amo17g3072 112 SMART prof_2 1 112 IPR005455 GO:0003779
Amo17g3072 112 PANTHER PROFILIN-2 67 112 - -
Amo17g3072 112 PANTHER PROFILIN 67 112 IPR005455 GO:0003779
Amo17g3072 112 PRINTS Profilin signature 94 111 IPR005455 GO:0003779
Amo17g3072 112 PRINTS Profilin signature 81 94 IPR005455 GO:0003779
Amo17g3072 112 Pfam Profilin 64 111 IPR005455 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3072 Amo-Chr17 134553155 134554361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g3072 68 112 Cytoskeleton Gene Families AT4G29350 80.000 1.80e-22 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3072 K05759 - csin:114285323 92.4337