Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3060 ATGGGTTATCTCTCTTGCAATGCCGACTCTGCAATCGCCACCTGTGACCCTCACTACTGTCATCTCAAGAACCGTAAAACCAACAACCTCCTTCAAATCCGCCACTTCCCTTACTCCGACATCCTCGCCGCCACTAAAACCTTCTCCGCCGATACCTTCCTCGGCAAAGGCAGCCACGGCAGCGTCTACAAAGCCACACTCGACGGCGGCAAGCTCATCGCCGCCGTCAAGAAAACCAAGCACGCCAAACCATCATCACGCCGTCACCAAAGTACCGCCGCAGCATCTTGCACCGGTTGCGGCAACTGCACCAGCCCGGCGGAGAACGAGATCGAGATCCTCTCACGCGTCTTTAGCCCCCGCCGGCTAGTGAACCTCATCGGATTCTGCACCGATCCAAGCAACGGCGGCAAGCTCATCGTCGTCGAGTACATGCCGAACGGCTCCCTCCACGACCTCCTCCACTCGCCGGTCCGACCGCCCGGTTGGACCGCACGCGTCCGGCTCGCACTTCAAATCGCGAAGGCGGTTCACGCGCTTCACACATCAAACCCTCCGGTGATTCACAGAGACATTAAATCTTCCAACGTTCTCATCGACGGAGCGTGGAACGCGAGGCTCGGAGACTTTGGGCTCGCGCTGAGAGGACACGTGGAGGACGTGCGCGTGAAGTGCACACCGCCAGCTGGCACGTTAGGGTACCTTGATCCTTGCTATCTTGCGCCCGAGGATCTGAGCGCTAAGAGCGACGTCTTCAGCTTCGGGATCTTGCTGTTAGAGATTCTCAGCGGCAGGAACGCCATCGACGTGAACTTCAGTCCACCGTCGGTGGTCGACTGGGCAGTGCCGTTGATTAAGAGAGGAGAGTTCGCCGTCATTTGCGACAGGCGGATCGGAGTGCCGTCGGATAAAGAGGTGGTTCGGATGGTGGCGGTGATGGCGGCCATGTGCGTGAGGTCCACGGCGGAGAAGAGGCCGTCGATGGAGGAGGTTGTGCAGTGCTTGAAGATTGCAAGGAAGAGAATGCGGGCGGCGCCGATATGGAGTGGATTGAGGTGGCGCGTGAGGCGCGTGGAGAGTGAGAAACGGTTAGAATGGGAAGCACGTGAGTGTGACAGTTATTACCATAGGAGTGAGGAGGAGGTAGTGAGAGCGGCGAAGGGTGGTGCGAGTAGAAGGAAGAACAGGAAGGTATCCAATGTGACGGGTGCAGAGTATTATGGTAGACCCTCATCCAATCATGTAGTGAGGTCAAAGTCAATTGGTGCGGGTTCTCTGAAAGTAAATTCGGATTCGGGAAGTTCGCGGTCGCAACAAAACGGGTCGGGTTTCGTGAGGAGAAGGTCGAAGCTGAACAAGTCTAGGTCCATGGGGGTGTTGCAAGGTTCTTCTCGTTTATCATCACATTATTATGAAAGTGATCCAATACATTCGTTAGAAACGGCAATGTCGTCTAAGTGGGTCATTACGGATAAGTTGGAAAAAAAACTGCTTGAGAAACCGTTAGTTAATTCTGTTGGAATTAATTAA 1530 0.5503 MGYLSCNADSAIATCDPHYCHLKNRKTNNLLQIRHFPYSDILAATKTFSADTFLGKGSHGSVYKATLDGGKLIAAVKKTKHAKPSSRRHQSTAAASCTGCGNCTSPAENEIEILSRVFSPRRLVNLIGFCTDPSNGGKLIVVEYMPNGSLHDLLHSPVRPPGWTARVRLALQIAKAVHALHTSNPPVIHRDIKSSNVLIDGAWNARLGDFGLALRGHVEDVRVKCTPPAGTLGYLDPCYLAPEDLSAKSDVFSFGILLLEILSGRNAIDVNFSPPSVVDWAVPLIKRGEFAVICDRRIGVPSDKEVVRMVAVMAAMCVRSTAEKRPSMEEVVQCLKIARKRMRAAPIWSGLRWRVRRVESEKRLEWEARECDSYYHRSEEEVVRAAKGGASRRKNRKVSNVTGAEYYGRPSSNHVVRSKSIGAGSLKVNSDSGSSRSQQNGSGFVRRRSKLNKSRSMGVLQGSSRLSSHYYESDPIHSLETAMSSKWVITDKLEKKLLEKPLVNSVGIN* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3060 509 MobiDBLite consensus disorder prediction 424 447 - -
Amo17g3060 509 MobiDBLite consensus disorder prediction 386 411 - -
Amo17g3060 509 PANTHER - 1 467 - -
Amo17g3060 509 ProSitePatterns Protein kinases ATP-binding region signature. 54 78 IPR017441 GO:0005524
Amo17g3060 509 Pfam Protein kinase domain 51 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g3060 509 MobiDBLite consensus disorder prediction 424 460 - -
Amo17g3060 509 SMART serkin_6 48 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g3060 509 SUPERFAMILY Protein kinase-like (PK-like) 30 336 IPR011009 -
Amo17g3060 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Amo17g3060 509 Gene3D Transferase(Phosphotransferase) domain 1 145 346 - -
Amo17g3060 509 Gene3D Phosphorylase Kinase; domain 1 20 144 - -
Amo17g3060 509 ProSiteProfiles Protein kinase domain profile. 48 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g3060 509 PANTHER OS01G0750732 PROTEIN 1 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3060 Amo-Chr17 134419799 134421984 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g3060 34 346 Receptor kinase-like Gene Family AT3G59420 39.937 7.10e-62 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Amo17g3060 Pkinase 5e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3060 - - ahf:112706221 912.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g3060 17 134419799 134421984 Amo17g3060 17 134419799 134421984 ECH
Amo17g3060 17 134419799 134421984 Amo17g3060 17 134419799 134421984 PCT