Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3058 ATGGGAGAAGATTGTGGAACCTGGTTACCGCYTATGCAATTTGGTTGGCAGTCACCCAATTTGGGTTCCTTTAGRGTTCCCKCTAATGCGTGGAAGCAAAATGGTATTTCTGCCACTGCCGTGAACTCTGGCATCAATMTCATAGCAAGGAATGAAACAATGCCAGCTTATGAGTCACCTTCAATGCCCAATTTGCCATTAGGATGTTCTAATGAACCCCATCSTTGGTTTTATTGTTTGCCTCGCTCTCGACAGGAGTTTACTCCTGCTCCAAACTTTGCTGCTGAGGAAAAATTCCTRGCCGATCYTGTAAAAGGTTTGAGGGGCAAATTTGCTCCTTATGGTGAATCAGGCTCCCCTCAGAAGCAATTCCTTGTTATTGATCAGACGGGTGGTCAAACAACTGTTGTTTATAGTTCTAAGTTTGGGAGTCCCAATGAGTGCCTTGCTTCTTGGCATTCAAAATTGCACGGCACAAACTATTTGAATGGGGAATACCRTTTGGGAAAAGAATTGAGCCATCCGAATGGGCCACTTGTGGATGATAAAGGGGATGAGAATCTGGGAACTGGTGTTGAAAGCGAGATGCATGAAGACACGGAAGAAATTAATGCATTGCTTTCCTCTGACAGRGATGGTTATTCTACGGGGAATGARGARGACGACGATGAAGTTACCAGRACAGGGCATTCTCCAAGTARAATGACCAATCTTTATAACCACGYAAAATTTGGAGGAATTGAAGAAGTTGCAAGCTCCACTGGGAGAACAAAGAAGAGGAAGCTATTAGATGGTTATCATGATGGCTTACAATTTATTGGTACTACCGATTCTTTGAAGTCGAAGAACAAATCCTTTGCAATGGAAGATGATGCCGAATCGAGATGTTCTAACTGCTACAATGGGAGATCTGAAGAAACGGATTCCCTGTCAGTTAACAAGAAGATGAGAAAGGAGAAATTACGAGAACTTTTGAATGTTCTTCAGAGCATGATTCCTGGTGGGATGGACAAGGACAGGGACCCAGCTATGCTCTTGGATGATGCCATACGCTGCTTGAAAGCCATGAAAGTCAAGGCTAAAGAGCTTGGACTCAAGTGA 1101 0.4305 MGEDCGTWLPXMQFGWQSPNLGSFRVPXNAWKQNGISATAVNSGINXIARNETMPAYESPSMPNLPLGCSNEPHXWFYCLPRSRQEFTPAPNFAAEEKFLADXVKGLRGKFAPYGESGSPQKQFLVIDQTGGQTTVVYSSKFGSPNECLASWHSKLHGTNYLNGEYXLGKELSHPNGPLVDDKGDENLGTGVESEMHEDTEEINALLSSDRDGYSTGNEEDDDEVTRTGHSPSXMTNLYNHXKFGGIEEVASSTGRTKKRKLLDGYHDGLQFIGTTDSLKSKNKSFAMEDDAESRCSNCYNGRSEETDSLSVNKKMRKEKLRELLNVLQSMIPGGMDKDRDPAMLLDDAIRCLKAMKVKAKELGLK* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3058 366 PANTHER TRANSCRIPTION FACTOR BHLH145 1 365 - -
Amo17g3058 366 MobiDBLite consensus disorder prediction 173 192 - -
Amo17g3058 366 MobiDBLite consensus disorder prediction 176 192 - -
Amo17g3058 366 MobiDBLite consensus disorder prediction 208 233 - -
Amo17g3058 366 PANTHER TRANSCRIPTION FACTOR BHLH145 1 365 IPR037546 -
Amo17g3058 366 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 305 356 IPR011598 GO:0046983
Amo17g3058 366 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 310 362 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3058 Amo-Chr17 134378263 134379363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g3058 76 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50010 30.796 1.53e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3058 - - gmx:102668102 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g3058 17 134378263 134379363 Amo17g3058 17 134378263 134379363 ECH
Amo17g3058 17 134378263 134379363 Amo07g1820 07 54292761 54294009 hybridization
Amo17g3058 17 134378263 134379363 Amo17g3058 17 134378263 134379363 PCT
Amo07g1820 07 54292761 54294009 Amo17g3058 17 134378263 134379363 PCT
Amo17g3058 17 134378263 134379363 Amo07g1820 07 54292761 54294009 PCT