Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3054 ATGAAAGGAGAATATGTAGAACACCACCACCCTCCAAAGAGTGAACCACCAAACATGTTCTCAAAGCTTCACCACCAATCACCACCACATCAACATCAGCATCAGCATCAACATCAACAGCATCCATTTTCTCTTCATAATCCATTCCAACACTTCTCAAGGGATCAATGCCAAGCTTCTGCGGCGCCGGAAGAAGATAGCCATGGTGGAGGCGGTGTAGGCGGCGCCGTCACTTCTCAGAAGCCGAACTCCTCCGGCGACGGAGCAACCATAGAGGTTGTGAGGAGGCCAAGAGGTCGCCCGCCGGGCTCCAAGAACAAGCCCAAACCGCCAGTGATCATAACGCGTGAGCCCGAGCCCGCCATGAGTCCGTACATTCTAGAAGTTTCTAGCGGAAGCGACGTCGTTGAAGCGTTAGCCAGGTTCAGTCGAAGGAGGAACATGGGGATTTGCGTCCTTACTGGATCCGGAACCGTTGCTAACGTCACTCTCCGTCAGCCCGGAGCAGCTCCCGGAGCCACCGTTACGTTTCACGGCCGATTCGATATCTTATCTGTTTCCGCCACGTTTCTTCCGCAGCCGTCGCCCGCGGTTCCTACTGCCTTCGCCATCTCGCTAGCCGGACCGCAGGGGCAGATCGTCGGAGGACACGTCGCCGGAGGACTTATGGCTGCCGCCACGGTGTTTGTTGTGGCGGCTTCGTTCAACAATCCTTCGTTTCATAGGTTGCCGCCGGAGGAGGATGCTCGGAACGATGTTTCCGGCGGGGACGGTCAGTCTCCGGCGGTTTCTGGTGGCGGTGGTGAGAGCGGGCATGGTCAGGCGGTGGATTCGTGTGGGATGTCGATGTATAGCGGCGTTCATCACTTGCCGGCGGCAGCGTCTTCCGATGTGATATGGACTCCGACGGCAAGGGCGCCACCGCCTCCTTATTGA 936 0.5737 MKGEYVEHHHPPKSEPPNMFSKLHHQSPPHQHQHQHQHQQHPFSLHNPFQHFSRDQCQASAAPEEDSHGGGGVGGAVTSQKPNSSGDGATIEVVRRPRGRPPGSKNKPKPPVIITREPEPAMSPYILEVSSGSDVVEALARFSRRRNMGICVLTGSGTVANVTLRQPGAAPGATVTFHGRFDILSVSATFLPQPSPAVPTAFAISLAGPQGQIVGGHVAGGLMAAATVFVVAASFNNPSFHRLPPEEDARNDVSGGDGQSPAVSGGGGESGHGQAVDSCGMSMYSGVHHLPAAASSDVIWTPTARAPPPPY* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3054 311 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 25 310 IPR014476 GO:0003680
Amo17g3054 311 SUPERFAMILY AF0104/ALDC/Ptd012-like 121 247 - -
Amo17g3054 311 ProSiteProfiles PPC domain profile profile. 119 256 IPR005175 -
Amo17g3054 311 MobiDBLite consensus disorder prediction 1 116 - -
Amo17g3054 311 MobiDBLite consensus disorder prediction 1 15 - -
Amo17g3054 311 MobiDBLite consensus disorder prediction 40 57 - -
Amo17g3054 311 Pfam Plants and Prokaryotes Conserved (PCC) domain 124 237 IPR005175 -
Amo17g3054 311 MobiDBLite consensus disorder prediction 240 277 - -
Amo17g3054 311 Gene3D - 123 253 - -
Amo17g3054 311 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 25 310 - -
Amo17g3054 311 PIRSF ESCAROLA 16 310 IPR014476 GO:0003680
Amo17g3054 311 CDD DUF296 124 222 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3054 Amo-Chr17 133917680 133919209 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g3054 87 309 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 65.665 5.82e-98 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3054 - - adu:107460948 558.14