Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3050 ATGGAATCGGAGGATTCGGTGAGACTAGAATTGGAAGAATTGCAGAAGCAATTGGGGAAGAAGCAAAGATTCGARAGCGCTGTTTCCTCTCTCAAATCCATGCTTCAGAGCAAATATCTATCAGCTTCTCCATCTCTTCGTAAATCTTTTTATTCGGTTATATGCCGAGTTGCTACCGTGTTGAAGACTAGATATACGGCACCGGGTTTCTGGAATGCTGGCCTAGGCCTGTTTGAGCAGGCTCAATTACTTGTTACTGAGCCTTCTGAGAAGGAGCACTTGAAGACTTGCATTGCTCAGGCCAGGGAACACTTGCATTTAGAAGATAACCCATCACAAACCTCGCAGCCTGCAGCGCAGAATTATACGAATGGAGGATATCTTTTCGAGGGGCATCTTACTGTAGATCCTGAACCTCCTCAGCCTCAATGGTTGGTGCAGTCAAACCTCTTGTCAACTGCTGCTACTTTGTTTGCTGCTGAATCGTCTCAAGGTTCGGCAGCGACYGATACCACACCAGAGAATGCAGCTAATGTGCTTCAAGAGCTTATARATAGATTGGAAGAAGTCATGCCCCTGATGATTGAAGATGGTCCTRTGGCTCCAAGGGCCCCTCCTGCCAGTAAAGAAGTCGTGGCGAGACTTCCTGTCATTACTCTCACAGAGGAAATACTGGCTAAGCTGGGGAAAGATGCAGAGTGTGCAATTTGCAGGGAGAACCTGGCTGTAGATGACAAAATGCAAGAGTTACCTTGCAGGCACACTTTCCATCCACCGTGTCTAAAACCATGGCTGGATGAACACAATTCTTGTCCGATATGCCGGTATGAGCTGCAAACTGATGATCATGCCTATGAGAGCTGGAAGGAAMGGGAAAAGGAAGCTGAGGAGGAGAGGAAAGGTGCTGAAAATGCCGTTAGAGGTGGTGAATATATGTATGTCTAG 945 0.4667 MESEDSVRLELEELQKQLGKKQRFESAVSSLKSMLQSKYLSASPSLRKSFYSVICRVATVLKTRYTAPGFWNAGLGLFEQAQLLVTEPSEKEHLKTCIAQAREHLHLEDNPSQTSQPAAQNYTNGGYLFEGHLTVDPEPPQPQWLVQSNLLSTAATLFAAESSQGSAATDTTPENAANVLQELIXRLEEVMPLMIEDGPXAPRAPPASKEVVARLPVITLTEEILAKLGKDAECAICRENLAVDDKMQELPCRHTFHPPCLKPWLDEHNSCPICRYELQTDDHAYESWKEREKEAEEERKGAENAVRGGEYMYV* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3050 314 MobiDBLite consensus disorder prediction 294 314 - -
Amo17g3050 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 308 - -
Amo17g3050 314 Coils Coil 285 305 - -
Amo17g3050 314 SMART ring_2 234 274 IPR001841 -
Amo17g3050 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 281 IPR013083 -
Amo17g3050 314 PANTHER ABI3-INTERACTING PROTEIN 2-1 8 308 - -
Amo17g3050 314 Pfam Ring finger domain 233 275 IPR001841 -
Amo17g3050 314 ProSiteProfiles Zinc finger RING-type profile. 234 275 IPR001841 -
Amo17g3050 314 SUPERFAMILY RING/U-box 228 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3050 Amo-Chr17 133791876 133794945 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g3050 7 314 C3H Transcription Factor Family AT5G20910 65.372 2.18e-137 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3050 K16274 - gmx:100798732 516.153