Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3047 ATGGCTTCTTCTTCTTTTGCAACTTTCAACCTTTCATTCTTCTCGTTTTTAATAACATTCACTTTTCTTCTACTTGCTAACCTCAGCACTGTTGCATATGCAGTGGCTAATCAAACTAGAGAAACGCCGCCGCCGCCACCGCCACCACCGCCGCTGGATTCCCAAAGAACTTCATCCGCCTTCAAGCCAGGCATGGCGGTGGTAGTTGGCATATTAACCACCATGTTCTCTCTCACCTTTCTCCTCCTCCTCTACATCAAGCACTGCAACGGCGGCGCCACCGACTCCACCGGAGCTACCGGAACCCGCTACAATTACACCTCACGCGCGGCAACATTCGCCGGAAGAAAAAACTCCGGCATCGACCGTTCCATAGTGGAATCGCTTCCAATCTTCAGATTCGGGTCCCTCCGGGGACAAAAAGAAGGACTCGATTGCGCGATTTGTCTCGCAAAATTCGAGTCCTCTGAACTCCTCCGGCTCCTCCCGAAATGCAAGCACGCGTTCCACGTGGAGTGCGTGGACACGTGGCTTGACGCGCACTCCACGTGTCCTTTGTGCCGGCATCGAGTGGATCCGGAGGACATTCTTCTGGTGGAAGACAACAATGCAGCCGCACCGGTGCACCCTCAGAGCGAGAACGAAGCGTGTTCGGAGAGGTACGAAACACGGCGAGTCTCCGGAAGGCATTCGTGGGTTGGTGAGAAAGAAGGAGGGTTCTTGGAGATCATTGTTGAGAACGAGAACGAAACAGAACGACGAAACGCAGCGCCAACGTCGTCGTTTAGGAGGTCGCTTGATAGTGCCACGTGTGCAACGACATCGAAATCGAATAATAATAATAACAAGAAGTGGTTAATGCGTCCAAGAAAAGACGGGATGCTGTTGGTGAAAACGACGACGCATCAGGAAGCGGAGAAAGAGAAAGAAAGGAGGAGCACCGGTGCGGAACGGAGGTTGGAGCACAGGATAATTGTCTCTCCTACCCCTAAACAATGCGGTTACGATTATAATGGTTTGTTGCGAGGGCAGTTACAACGGTGGAGCGATGTTCAGCCGTCGGATCTACTTTACCTGACATCGGAGATGATAATAAGTAAGCATAATAACGGTAGTGGTGCTGAAATCGGGGGCAATTTGGTAATTAACACGAGGAGTATGTCTGAGATAACGGGATTGAGCAGGGAAGAAGAACAAGGAGTAAGAGGAGGAGGAAGAAGAGAAGAGGGGGTTGTTACGAGGTGGCTGGGATGGATATCAAGGACGCAGACACAGCCAGCTGTA 1284 0.5132 MASSSFATFNLSFFSFLITFTFLLLANLSTVAYAVANQTRETPPPPPPPPPLDSQRTSSAFKPGMAVVVGILTTMFSLTFLLLLYIKHCNGGATDSTGATGTRYNYTSRAATFAGRKNSGIDRSIVESLPIFRFGSLRGQKEGLDCAICLAKFESSELLRLLPKCKHAFHVECVDTWLDAHSTCPLCRHRVDPEDILLVEDNNAAAPVHPQSENEACSERYETRRVSGRHSWVGEKEGGFLEIIVENENETERRNAAPTSSFRRSLDSATCATTSKSNNNNNKKWLMRPRKDGMLLVKTTTHQEAEKEKERRSTGAERRLEHRIIVSPTPKQCGYDYNGLLRGQLQRWSDVQPSDLLYLTSEMIISKHNNGSGAEIGGNLVINTRSMSEITGLSREEEQGVRGGGRREEGVVTRWLGWISRTQTQPAV 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3047 428 CDD RING-H2_EL5_like 145 188 - -
Amo17g3047 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 195 IPR013083 -
Amo17g3047 428 SMART ring_2 146 187 IPR001841 -
Amo17g3047 428 Pfam Ring finger domain 145 188 IPR001841 -
Amo17g3047 428 MobiDBLite consensus disorder prediction 254 284 - -
Amo17g3047 428 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 37 423 - -
Amo17g3047 428 PANTHER RING-H2 FINGER PROTEIN ATL43 37 423 - -
Amo17g3047 428 MobiDBLite consensus disorder prediction 251 285 - -
Amo17g3047 428 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Amo17g3047 428 MobiDBLite consensus disorder prediction 40 54 - -
Amo17g3047 428 SUPERFAMILY RING/U-box 130 193 - -
Amo17g3047 428 MobiDBLite consensus disorder prediction 38 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3047 Amo-Chr17 133676917 133678294 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g3047 58 428 C3H Transcription Factor Family AT5G05810 45.385 4.13e-84 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3047 K19041 - twl:119999828 310.842