Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3038 ATGATGTTGTGCTCATTCCATCATCATCACCTTGGGCTTCAGTTCCATTCAACAATGGCCTATTCGGGTTCACATAGGCTACATAGCAATATCGAAAGCTGCGGTTTTTGTCATAAGCCCATGTGTGCAGATCGATTATGTTTTGTAAATATCAATCATTCGCCAGAGTGTTTGAGGCGGGATTCTTCTGCACTTATCCTATCCAGAGTACATGTCCCACTTAGGCCCTTACGACGTGTTTCGGTGTGCCAGTCCACACTAATACCAGCTGGAGGGTGTGAGGCTCCACTCAGGAATTTGGCTACTATTTCTTTATCAAGGCCACAGTGCACTATATCAGGAAAACCCATTGTACAATTTGTACATCAATTCATCCCTGCCCTTGGTATCATTGGTTTTGCTGTCTGGGGTCTAGAGCCACTTCTGTGCCTGAGCAGGACTCTATTTCTGCAAAAGACTGACAAAAGTTGGAAGAAAAGTAGTTTGCGTTATTTAATGAAATCTTATCTTCAACCTTTGCTGCTATGGACAGGGGTTATGCTCATATGCAGGGATTTAGATCCATTAGTCTTACCATCAGAAACCAGTCAGGCTGTGAAGCAACGGCTGCTGAGTTTTGTGAGATCCTTGTCAACAGTCCTTACATTTGCTTATTGTTCTTCAAGCTTAATTAAGCAAGCACAAAAAAGTTGTATGGAGATGAATGACTCCAGTGATGAAAGGAATATGAGGATTGATTTTACTGGTAAAGCTTTATATACTGCAATATGGGTAGCTGCTGTGTCACTGTTCATGGAGTTGCTGGGATTCTCCACACAGAAATGGTTGACTGCTGGTGGTTTGGGCACAGTATTGCTTTCGCTTGCAGGTCGTGAGATATTCATGAACTTCCTTTCAAGTATAATGATTCATACAACTCGACCATTTGTTGTGAATGAGCGGATTAAAACAAAGATTAAAGATGATGAGGTTTCTGGTAGAGTTGAGCATGTAGGCTGGTGGTCACCAACAATTGTTAGAGGTGCTGATTGTGAAGCAGTACATATTCCTAACCAGAAGTTGAGTGTAAACATTGTAAGGAATCTTAGTAAGAAATCTCATTGGCGCATCAAGACTCACCTTGCCATCAGTCACTTGGATGTTAACAAGATCAATAATATCCTAGCTGATATGCGCAAGGTTTTGGCTAAAAATCCTCAAATAGAGCAGAAAAGATTGCATAGAAGGGTTTTTCTGGAGGATATCAATCCAGAAAATCAGGCTCTTATGATATTAATATCTTGCTTTGTTAAAACTTCACATTCCGAAGAGTACCTTCGAGTTAAGGAGGCTATTCTCTTGGATCTTCTCAGAGTTATCGATCATCATGGAGCTCGACTAGCGACCCCTATCCGCACAATTCAGAAGATGTACAGTGTCACTGATTCAGAAGCCGATCCATTTGATGAGAACCTATTCACTCGTTCCAGAGCTAAGGCTAACCGTCCATTCTCATCAAAGGATTCACCTTACAATGTTAAGCCTTCAATTCATTCGAACATTACAAACGAGAAGGATAACAAGTTTGAGGAAACCTTGACATCTGACTTAAGAGTAGATGACGACTTTGCAGGGCCATCAACCTCCACATCCAGCGTAAACTCCAGCAACGAGAAATTTAACCCTTCTGAATCCAAAACCAAGAATATGGATCATGATAATTTGGTCCAGAAGACATCCAAATCCATGCAGCCCAAGGAAAAAGCAGGAAGTGCAGGAAACAAGACATCACCGGAATTTTTGTTGACTTCCAAGAAGTCAGGCAGAGGAGATGCTACTAATTCTGTTACCTCTTCACCATCAAAGAAAGGTGAAGAAAAAGATAAATCTGGTGGCTCATCATCATCAACTATTCCTTCCTTGAAAGAGAATATTGTTCTTGATGCTGCCTTGCTGGGAGCGAAACGAACACTTGAAATAGACGACAAAGTTAGTCCACCTATCCCTGCAGAGCCTCCAGAATTCGCTATCCAGCAGAAAGGATGTGAACCTCGTGGAATTAAGGATCACAAGGGTTGTAAGAAGTCTCCTAATGCTAAGCAGAGTGATTAG 2091 0.417 MMLCSFHHHHLGLQFHSTMAYSGSHRLHSNIESCGFCHKPMCADRLCFVNINHSPECLRRDSSALILSRVHVPLRPLRRVSVCQSTLIPAGGCEAPLRNLATISLSRPQCTISGKPIVQFVHQFIPALGIIGFAVWGLEPLLCLSRTLFLQKTDKSWKKSSLRYLMKSYLQPLLLWTGVMLICRDLDPLVLPSETSQAVKQRLLSFVRSLSTVLTFAYCSSSLIKQAQKSCMEMNDSSDERNMRIDFTGKALYTAIWVAAVSLFMELLGFSTQKWLTAGGLGTVLLSLAGREIFMNFLSSIMIHTTRPFVVNERIKTKIKDDEVSGRVEHVGWWSPTIVRGADCEAVHIPNQKLSVNIVRNLSKKSHWRIKTHLAISHLDVNKINNILADMRKVLAKNPQIEQKRLHRRVFLEDINPENQALMILISCFVKTSHSEEYLRVKEAILLDLLRVIDHHGARLATPIRTIQKMYSVTDSEADPFDENLFTRSRAKANRPFSSKDSPYNVKPSIHSNITNEKDNKFEETLTSDLRVDDDFAGPSTSTSSVNSSNEKFNPSESKTKNMDHDNLVQKTSKSMQPKEKAGSAGNKTSPEFLLTSKKSGRGDATNSVTSSPSKKGEEKDKSGGSSSSTIPSLKENIVLDAALLGAKRTLEIDDKVSPPIPAEPPEFAIQQKGCEPRGIKDHKGCKKSPNAKQSD* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3038 696 MobiDBLite consensus disorder prediction 676 690 - -
Amo17g3038 696 Pfam Mechanosensitive ion channel 250 459 IPR006685 GO:0016020|GO:0055085
Amo17g3038 696 MobiDBLite consensus disorder prediction 492 637 - -
Amo17g3038 696 MobiDBLite consensus disorder prediction 569 613 - -
Amo17g3038 696 MobiDBLite consensus disorder prediction 514 531 - -
Amo17g3038 696 Gene3D - 308 361 IPR023408 -
Amo17g3038 696 MobiDBLite consensus disorder prediction 537 556 - -
Amo17g3038 696 MobiDBLite consensus disorder prediction 492 513 - -
Amo17g3038 696 MobiDBLite consensus disorder prediction 656 696 - -
Amo17g3038 696 PANTHER MECHANOSENSITIVE ION CHANNEL-LIKE PROTEIN 19 593 - -
Amo17g3038 696 SUPERFAMILY Sm-like ribonucleoproteins 293 363 IPR010920 -
Amo17g3038 696 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 19 593 IPR045042 -
Amo17g3038 696 Gene3D - 202 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3038 Amo-Chr17 133498713 133505015 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g3038 25 656 Mechanosensitive Ion Channel Family AT1G58200 49.848 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3038 K22047 - gmx:100797302 819.305