Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3036 ATGATGGCCTACACAGGTTCAATGCAGTTGCCTCGTGAAATTAGGCTACACAGTAATAGTGGGATCTGTAGTTTCCATAATAATCCAATAGGTATTGGGCGATTACATTTGGTTACCATAAATATTTCACCACGCAGTTGGAAGCAGAATTCTTCAGCACGCCATCTTTTCAATAAAGTACACGCCCCAATAAGACATGTGTCTTCCAGATGTAAAGTTTTCATATGTAGGTCTGTCCTAATACCAGGTGGAGGGAGTGGGACTCCACTCATGAAATCTGCTGCTGTATTTTTAACAAGGTCGCAGGAGACTTTTAGTGGGAACCCTGTTTTGCTTCGATTGATCCCAGCACTTGGTATCATTGCCTTTGCTGTTTGTGGCCTTGAACCACTCATACGTCTTGGCAGAGTTCTTATTCTTCAAAGAACTGACAGTACTTGGAAGAAAAGTAGCTCCAGATATATCGTGACATCTTACTTCCAGCCTTTGCTATTGTGGACTGGGGCAATGCTCATATGCAGGGCACTAGATCCACTGGTCCTACCATCTGAGGCCAGCCAGGCTGTGAAGCAACGGCTGCTGAATTTTGTGAGATCTTTGTCAACAGTGATTTCATTTGCTTACTGTTTATCAAGCTTTATTCAACAAGCACAAAAATTCTTTTTGGAGGCAAATGACTCCAGTGATTCAAGAAATGTGGGATTTGACTTTGCTGGGAAAGCTGTATATACTGCTGTATGGGTTGCTGCAGTGTCATTGTTCATGGAGTTGCTAGGTTTCTCCACACAGAGGTGGTTAACTGCTGGTGGTTTGGGCACAGTATTGCTCACTCTTGCAGGTCGCGAGATATTCACAAACTTCCTGTCGAGTATAATGATCCATGCAACTCGGCCATTTATTATGAATGAGTGGATTCAAACAAAGATTGAAGGATATGAGGTTTCTGGTACAGTTGAGCATGTAGGATGGTGGTCACCAACAATTGTGAGAGGTGATGATCGGGAAGCAGTTCATATTCCCAATCATAAGTTCACTGTAAATGTTGTGAGAAATCTGACTCAGAAATCRCATTGGCGCATCAAGAGCTACATTGCTATCAGTCACTTGGATGTTAACAAAATTAATAATATTGTAGCTGATATGCGGAAGGTTTTGGCAAAAAATCCTCAAGTAGAGCAACAAAAGTTGCATAGGAGGGTTTTTCTGGAGAATGTCAATCCGGAAAATCAGGCTCTTATGATATTAATATCTTGCTTTGTGAAAACTTCACATTTTGAAGAGTACCTCTGTGTTAAGGAGGCAATTCTCTTGGATCTTCTTAGAGTTGTCACTCARCATCGAGCTCGGCTAGCCACTCCCATRCGTACAGTTCAGAAAATATACAGTGAGGCTGACTCGGAAAATATACCTTTTGGGGACACTATTTTCACTCGATCCAGAGCAGCAGGAAATCGCCCATACCTCCTTATAGAACCGCCATATAAAGTTAATGGTGAGGATAAACCTAAYCCTTCAGCTCGTTCGACTCGTCCAAATGAGGAAAAAGATGCCAAAGTTGATGAAACCTTGATGTCTGACCCCAAAGGAGATGAGAATTCAGTGGTGACATCAACCACCTCACCTGGTGTAAGCTCCAAGGATAAATCCAAGACAGCTTCTGAAGCCCAGAGTCAGAATCTGGGTTCTAATGGTTCAGTTGAGAAGACCTCCAAAACCTTGCAGCCCAAAAAGGAAAATGCAAATGCAGGAAAGGGAGCAACAGTTCCCCTATCGAAAAACCTTGCACAAAGTGCTGTGCCCGAAACTTCTCCGGTGACTTCACATGAGTCTAGCAAYGGAGAWACAACTTCTGCTAGTCCTTCACCGSTGAAGCAAGATGAAGAGAAATCTGCTGTGTCCTCACCTTCAATTAGGCCTTCRTTGGAAGATAATATCCTCCTTGGTGTTGCTCTCGAAGGTTCAAAACGAACTCTACCYATCGAGGAAGAAATGACTCCCCTTCCTATCCCTGGAGAGTCGCAAGAATTTGCTGTCCAAAGGAATGGGAGTGGACCTCCTGCTACCAAGGATAAGAAGGATCCTAAGCAGAATGATTAG 2097 0.4306 MMAYTGSMQLPREIRLHSNSGICSFHNNPIGIGRLHLVTINISPRSWKQNSSARHLFNKVHAPIRHVSSRCKVFICRSVLIPGGGSGTPLMKSAAVFLTRSQETFSGNPVLLRLIPALGIIAFAVCGLEPLIRLGRVLILQRTDSTWKKSSSRYIVTSYFQPLLLWTGAMLICRALDPLVLPSEASQAVKQRLLNFVRSLSTVISFAYCLSSFIQQAQKFFLEANDSSDSRNVGFDFAGKAVYTAVWVAAVSLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFIMNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFTVNVVRNLTQKSHWRIKSYIAISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSHFEEYLCVKEAILLDLLRVVTQHRARLATPXRTVQKIYSEADSENIPFGDTIFTRSRAAGNRPYLLIEPPYKVNGEDKPNPSARSTRPNEEKDAKVDETLMSDPKGDENSVVTSTTSPGVSSKDKSKTASEAQSQNLGSNGSVEKTSKTLQPKKENANAGKGATVPLSKNLAQSAVPETSPVTSHESSNGXTTSASPSPXKQDEEKSAVSSPSIRPSLEDNILLGVALEGSKRTLPIEEEMTPLPIPGESQEFAVQRNGSGPPATKDKKDPKQND* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3036 698 MobiDBLite consensus disorder prediction 590 640 - -
Amo17g3036 698 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 2 696 - -
Amo17g3036 698 MobiDBLite consensus disorder prediction 529 570 - -
Amo17g3036 698 Pfam Mechanosensitive ion channel 240 448 IPR006685 GO:0016020|GO:0055085
Amo17g3036 698 MobiDBLite consensus disorder prediction 506 527 - -
Amo17g3036 698 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 2 696 IPR045042 -
Amo17g3036 698 MobiDBLite consensus disorder prediction 492 698 - -
Amo17g3036 698 Gene3D - 195 297 - -
Amo17g3036 698 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
Amo17g3036 698 Gene3D - 299 354 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3036 Amo-Chr17 133481949 133488024 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g3036 1 678 Mechanosensitive Ion Channel Family AT1G58200 53.690 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3036 K22047 - gmx:100796022 1089.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g3036 17 133481949 133488024 Amo17g3036 17 133481949 133488024 ECH