Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3025 ATGACAATTCCAGAAAAGAAACCCAACAAATTAGTGCCTTTCACGGAACAAGACGCTGCTAGAATCGCACAAAGGTACGATGCAACGACGGTGTTAACCTTACTTCAGGAGGTGGCTCAGGCTCAGTGTCCGAACGCAAAAATTGATTGGAATGAATTGGTGAAGAGAACCTCAACTGGGATCTCTAATGCCAGGGAGTATCAGATGCTGTGGCGGCATTTAGCCTACGGTCATGCCCTTGTCGACAATCTCGAAAATGGCGCGGAACCTCTGGATGATGATAGTGACCTAGAATATGAGGTTGAAGCATTACCCCCAATAAGTCCGGAAGTAGCATCAGAGACTGTGGCATGTGTGAAGGTAATGATTGCTTCACTAAGTGAATCAACACCTAGTAGTTCAACAATTGAGGCTCCACTGACTATACATGCTCCAGTTTGCAATTCATCTAAAACTTCTAACAAGGGCTCACAATCCTCTAGTTTGATGCAAGGAACAGAGATTATTTTTCCGGTTACTATTAAGAGACAGACACTGCCAGCTGTATCATTGACAGATAATATTGAAAGCAAGGGATTAGATGGTAGCAACATGGCTTCCAAAAAGAGGAAAACAGCATGGTCAGAGGAAGAGGACAATCTGCTACGAGATGCTGTTCAAAGATTTGGTGAAGGGCATTGGGCTACCATTGCAAAAGGAGGCAACTTTCCTGTTAAGAGAACTGCTAAACAGATATATCAAAGGTGGAACTTTTTGCAAAAGAAAGATGACAGTACCAATTCAGGACCCATCTTGACCAGCACGCGTTATGATACTGCTGAACAACAAGCAACTCGTCACTCATTATCTTTAGCCCTTGATATGCCATTAAAAAAGTTAACTGCTCCCGGAATGACCAGTAGGACAACCTTGAATATGTCAGGTAAAAATTTGTTGCAGCATGTTGCTACAGAGTCTTCACCGCTTCATGGTCATGTTGTACCACCTCAGCATCCTTCTCAAGGGTCTTTTGTGGGGTCTTGTAGTTCCTCACTGAAATCTACATTAGTTCCTGAAAAACCATTGCTGGAAGTTCATCCAACTCCTAACGGTACAGCAAAAGGTGCCACAATAGTTTCTGGTGCCCAAATAGTTTCAACGTCAGATTCTGGATCACAAGTAAAGGTTTCACATAGAAACGTGGTTGCTACAACAAGTAGTTGTTTGACAAAGTCATCAACTCCTGCGTCATTGCCTCCGGAATCAAAGGTACAATTTCAAACAGATCCGAGTTCAGCACCTGTTTGCACCAATCAACTGTTGTAA 1305 0.4307 MTIPEKKPNKLVPFTEQDAARIAQRYDATTVLTLLQEVAQAQCPNAKIDWNELVKRTSTGISNAREYQMLWRHLAYGHALVDNLENGAEPLDDDSDLEYEVEALPPISPEVASETVACVKVMIASLSESTPSSSTIEAPLTIHAPVCNSSKTSNKGSQSSSLMQGTEIIFPVTIKRQTLPAVSLTDNIESKGLDGSNMASKKRKTAWSEEEDNLLRDAVQRFGEGHWATIAKGGNFPVKRTAKQIYQRWNFLQKKDDSTNSGPILTSTRYDTAEQQATRHSLSLALDMPLKKLTAPGMTSRTTLNMSGKNLLQHVATESSPLHGHVVPPQHPSQGSFVGSCSSSLKSTLVPEKPLLEVHPTPNGTAKGATIVSGAQIVSTSDSGSQVKVSHRNVVATTSSCLTKSSTPASLPPESKVQFQTDPSSAPVCTNQLL* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3025 434 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 7 431 - -
Amo17g3025 434 ProSiteProfiles Myb-like domain profile. 199 253 IPR001005 -
Amo17g3025 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 199 257 IPR017930 -
Amo17g3025 434 CDD SANT_TRF 207 249 - -
Amo17g3025 434 SUPERFAMILY Homeodomain-like 202 255 IPR009057 -
Amo17g3025 434 SMART sant 203 255 IPR001005 -
Amo17g3025 434 Gene3D - 196 260 - -
Amo17g3025 434 MobiDBLite consensus disorder prediction 403 424 - -
Amo17g3025 434 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 7 431 - -
Amo17g3025 434 Pfam Myb-like DNA-binding domain 205 250 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3025 Amo-Chr17 133329947 133333608 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo17g3025 Myb_DNA-binding 9.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3025 - - aip:107606216 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g3025 17 133329947 133333608 Amo17g3025 17 133329947 133333608 PCT