Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3022 ATGCCGGAGAAGTCCAGGAAGGTACCTTTCACGGAACAAGACTCAGCAAAGCTCCTAGAAAGGTATGATGCAACGACGGTGTTAACTTTGCTTCAGGAACTTGCGCACTATCCTCACGCGAAGATCGATTGGAATGAGTTGGTGAAGAATACATCAACTGGCATTTCCACCGCCAGAGAGTATCAGATGGTGTGGCGCCACTTGGCCTACCGTCATGCCCTTGCTGAAAATCTTGAAGATGGTGCTCAACCTCTGGATGATGATAGTGACCTAGAGTGCGAGCTGGAAGTATCGCCTCCAGTAAGTGCTGAAGCTGTGTCAGAGGCTGCAGCATGTATGAAGGTAATGATTGCTTCTCGTACGCTGAGTGAATCAACCCCTAGTAGCTCAACGATTGAGGCTCCATTGACTATAACTGTTCCGGTTTGCCGTGGATCTGGAACTCCTAGTGGAAGTTCACAATCATCTAAATTGATGCAAGGGACAAATGTTATTTTTCCGGTTACTGTTCAGAGACAAACACTGCCAACTGCACCATCAACAGATGGTGTTGAGAACAAGGGATTAGGTGGTGGCAACATGGCTTCCAAAAGGAAGAGAAAAGCATGGTCAGAGGAAGAGGACATCCAGTTACGAGCAGCTGTTCAGAGATTTGGTGAAGGAAATTGGGCTAACATGGCCAAAGGAGATAACTTTCCTATTAAGAGAAGTCCTACTCAATTGGCTCAGAGGTGGAGCATTTTAAGAAAGAAAGATGGAACTGCCAATTCGGGAACCATCGTGACCAGCACAACTTATACTACTGCCGAACAACTGGCAACTCGTCATTCATTATCTTTAGCCCTTGATATGCCATTCAAGAAGTTAACTGCTCCTGGAACTGCTGATCAAGCTAAGACATCCTTAACAAGTAAAACTCAAGTGCAACATACCACTACAGCAACAACAATACAAAGTAGTTTACCACCACATCAGCAATCAATGCTCAGAGGTAATCCAACTCCAAATCCTGCATTAAAAGCTACTGCAGTTGCTGTTGGTGCCAGAGTTGTTTCTCAGTCAAATATTGCATCACAAATAAAGGTTGCACAAGTAAGAAATGCCGTGCCTGGAACAAGTATTTCATTGGCAAAACCATCCACTTCTGCTGGTATGTCTTCAGACTTGGAGGTACAAGCTCGCACTAGTTCAAGTGTTGCACATGTTCCCCCTCAGTCTGTACGCATTCCATCTCAGTCTGCACCTGCACCCTCCCAGTCAACTGCTCCCATCACATCTCCGTTATCTCCGTTATCATCCTCTAGTACCGTTAAAGCCGCCTCTTCTACGGTGCCTGTATTGCCTGAGAAGGACAAACCCGTTACCCCTACCCTTGTGGTTAACAAAGTTCCAATAAAGCAAGAAGTTAATACTACAGATGAATTGCGAAATTCAAAGCCTAGCCCGGCACCAAAAGAGATGGTTCAAAATGATGAGAAATCAACTCAAGACAAGAGCATGAATATTCCCGTTAGAGAGAGGGTAACTTCTCTTGTGGGAAGTACAAGAAAGGAGGAATTAGCAGAAGATAAAGGAGTGCCAAAAAATCAAGTCAAGTCTGAAGATGATGGAAACAAGGGGAGCCATGAGTTAGATAAAGAAAAGAGCAAAATTTCAATTAATGGAAGATCTCAGGATCAAAAGATGGATGAGAAGCAAGAAAATTTGCAGAACTAG 1716 0.4435 MPEKSRKVPFTEQDSAKLLERYDATTVLTLLQELAHYPHAKIDWNELVKNTSTGISTAREYQMVWRHLAYRHALAENLEDGAQPLDDDSDLECELEVSPPVSAEAVSEAAACMKVMIASRTLSESTPSSSTIEAPLTITVPVCRGSGTPSGSSQSSKLMQGTNVIFPVTVQRQTLPTAPSTDGVENKGLGGGNMASKRKRKAWSEEEDIQLRAAVQRFGEGNWANMAKGDNFPIKRSPTQLAQRWSILRKKDGTANSGTIVTSTTYTTAEQLATRHSLSLALDMPFKKLTAPGTADQAKTSLTSKTQVQHTTTATTIQSSLPPHQQSMLRGNPTPNPALKATAVAVGARVVSQSNIASQIKVAQVRNAVPGTSISLAKPSTSAGMSSDLEVQARTSSSVAHVPPQSVRIPSQSAPAPSQSTAPITSPLSPLSSSSTVKAASSTVPVLPEKDKPVTPTLVVNKVPIKQEVNTTDELRNSKPSPAPKEMVQNDEKSTQDKSMNIPVRERVTSLVGSTRKEELAEDKGVPKNQVKSEDDGNKGSHELDKEKSKISINGRSQDQKMDEKQENLQN* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3022 571 ProSiteProfiles Myb-like domain profile. 195 249 IPR001005 -
Amo17g3022 571 SUPERFAMILY Homeodomain-like 198 251 IPR009057 -
Amo17g3022 571 MobiDBLite consensus disorder prediction 176 202 - -
Amo17g3022 571 Gene3D - 193 255 - -
Amo17g3022 571 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 2 569 - -
Amo17g3022 571 MobiDBLite consensus disorder prediction 373 436 - -
Amo17g3022 571 MobiDBLite consensus disorder prediction 469 571 - -
Amo17g3022 571 CDD SANT_TRF 201 250 - -
Amo17g3022 571 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 253 IPR017930 -
Amo17g3022 571 SMART sant 199 251 IPR001005 -
Amo17g3022 571 MobiDBLite consensus disorder prediction 511 571 - -
Amo17g3022 571 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 2 569 - -
Amo17g3022 571 Pfam Myb-like DNA-binding domain 200 245 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3022 Amo-Chr17 133308379 133313702 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo17g3022 Myb_DNA-binding 2.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3022 - - adu:107460964 955.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g3022 17 133308379 133313702 Amo17g3022 17 133308379 133313702 ECH