LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo17g3009	ATGCCTCACAGAGCCACATACATTTTCCCGCGTCAATTTGGGGAGAGAGGGTTAGATGAGTCTTCGAAACAGCTATTGGATCACGAGAAGAAGAAGACACTTACCTCATGGGTCAAATCGGAACCATCCTTCGGGATCGAAAGCGACGCTACTTCCAAGAAGTCCAAAAACGACGTCGTTGAAGATGATGAAGATGTCGTTTACTCTAAAACCCACTCCGCGGTGTCGGAGCTCTTCACCGTCGTTGGTGGCCGCCGTGAGAATCTCCGGAATAAGCAAAAGCATGTCGCCGGTGCGTTCCGTGACTGGCTGATCGAGAGAAAAGGAGATCGCCGATCCAGTCATGATCACCGGAGGTTCTCGTTGTCCGAGGAAGAAGACGAGTGCGGGCTTCTGCTTCCTCCGTCGGCGGCGAAGGACAGTGCCGGTGGAGCATTGGACCAGAGTTTTGACCGGCAGGTGTCGCTTCCCAGAATGTCTAGCGGGAGCAGCTACGCCGGGAGCTTGTTCTCCGGGACGGCAACGGCGACGACGGTGGACGGGAATTTCTTGAGCGAGGTGGTGAAGGAGGAAACGACGTCGTCTTCGACGTCGAGTAGGAGGAGGAGGCAGCAGGAGGAGGTGGAGGAAGAAGATGAGAAAGAGAGGAGAGAGAAGGTTGCGGAGAAGTCGAAGGAGAGCTACATGCTGCAGGTGACAATGGCGAAGAGGCTCACTTGCTTGGCGAGTCTCGTGACTGAGCCCATTCTTGCTCCCACCACTGAGACATGGGATTCCGAATCCGTTTCCTATCGTCTATGGGTGAGTGGGTGTTTGTCATACTCAGACAAGATATCGGATGGATTTTACAACATACTGGGGATGAATCCGTACCTATGGGTGATGTGCAATGAGGGGGAGGAAGGGAAAAAGTTACCTAGTTTGATGGCGCTGAAGGCAATTGAACCCGGCGAGACGAGTATAGAGGTGGTTCTTGTTGATAGACAAGGCGATTCTCGGTTGAAGGTACTTCAAGATAAAGCGCAGGAGTTGTATGGTGCTTCAGAGAATACTCTCGTGTTGGTTGAACAGCTTGGAAAACTTGTTGCCACATATATGGGGGGTACATATCCGGTGGAGCAAGGAGATCTGCACAAGCGGTGGAAGATGATCAGCAGGAGGTTGAGGAATTTTCACAAGTGTGTTGTTCTTCCGATAGGCAGCTTATCTACTGGGCTTTGTAGACATAGGGCCATTCTCTTCAAGAAATTGGCAGATTATATAGGTTTGCCATGCCGCATTGCTCGAGGTTGCAAGTATTGTGCTGCAGATCATAGATCCTCTTGCTTAGTCAAGTTCAAAGATGACAATCAGCTCTCAAGGGAATATGTAGTCGACCTGGTTGGGGAACCAGGAAATGTCCATGGGCCAGATTCCTCAATTAATGGAGCGTATCTTTCTTCAATGCCATCCCCATTTCAAATTTCTCATTTAAAAGAATCACAATCACCTTATATGGATGGCACAACATGTTCTCAATCTCCGAGTTCCAACCACATTTCTGTAATCCCTGAAAGTCATCCGTATTTAGGCTGTGAACAGGAAGATCAACAAATTAAAGAAGCTGAATTGCTAAAAAATCACAACAGCTCCATTTATTCTTCATTTGAGCAATCCCAAGAAGAAACAGTTCCACCTCCAATTCTTTTGGATTTAAACGAGAATAATAAGGCATGTGCAGTCCTGGACCCAATTTTGCCTTCCATCCATGAAGATGTTTCTAAAGCTCTTCATCCAGCTACTGAAGTAGCATTTCATGATTATGTTGGACTTGGCAAAGATGCAATTACTGTACAAGAAACTTACAAGAATGAGATCATTGTTACTGAAAGTTCTGTGGTAAAAACTAATTTTAAGCAATCTTTATTGTGCTCATCCAGCCAATCAGAACAGCTGCAGGTAGACAATGGAATCGAAAACCAGGGCTGTTTACCATCTGGGAATATTCCACGGTACCTGAATCTTGAGCCATCACTTGCAATGGACTGGCTTGAGATATCATGGGAGGAATTACGTATCAAAGAGCGTGTTGGTGCTGGCTCATTTGGGACAGTGCACCGTGCGGAATGGCATGGATCAGATGTTGCCGTCAAGGTTTTAACAGTTCAAGATTTCAGTGATGATAAATTAAAGGAGTTTCTGAGAGAGGTTGCAATAATGAAACGGGTTCGCCATCCAAATGTGGTGCTCTTCATGGGTGCTGTTACAAAACGCCCCCATCTATCAATAGTGACAGAATATTTGCAGAGAGGTAGTTTATACCGACTGATACATAAGCCAACAGCTGGTGAACATTTGGATAGCAGGAGAAGATTACGGATGGCTTTAGATGTGGCTAAAGGGATCAATTATCTTCATTGTCTAAAACCTCCTATCGTGCACTGGGATCTCAAATCTCCAAACTTGTTAGTGGACAAAAACTGGAACGTGAAGGTTTGCGATTTTGGGTTGTCTAGATTTAAGGCAAATACATTCATACCATCAAAGTCTGTTACTGGAACACCTGAATGGATGGCACCAGAGTTTCTCCGTGGAGAACCTTCAAATGAGAAATCTGATGTATACAGTTTTGGAGTTATCCTATGGGAGCTAGTAACCATGCAACAACCATGGATGGGACTTGGCCCTGCCCAGGTGGTTGGAGCTGTTGGTTTCCAGAATAGGAAGCTTGCCATTCCTCCAAATGTGTCCCCAGTATTGGTCTCCCTCATGGAATCTTGTTGGGCTGATGACCCCGCCAAACGCCCATCTTTTGCTAGTATGGTTGTCTCGCTGAAGAAGCTGCTCAAGTCTCCAGCAGAGATGATAAAAATGGGCGAAACTTAA	2865	0.4649	MPHRATYIFPRQFGERGLDESSKQLLDHEKKKTLTSWVKSEPSFGIESDATSKKSKNDVVEDDEDVVYSKTHSAVSELFTVVGGRRENLRNKQKHVAGAFRDWLIERKGDRRSSHDHRRFSLSEEEDECGLLLPPSAAKDSAGGALDQSFDRQVSLPRMSSGSSYAGSLFSGTATATTVDGNFLSEVVKEETTSSSTSSRRRRQQEEVEEEDEKERREKVAEKSKESYMLQVTMAKRLTCLASLVTEPILAPTTETWDSESVSYRLWVSGCLSYSDKISDGFYNILGMNPYLWVMCNEGEEGKKLPSLMALKAIEPGETSIEVVLVDRQGDSRLKVLQDKAQELYGASENTLVLVEQLGKLVATYMGGTYPVEQGDLHKRWKMISRRLRNFHKCVVLPIGSLSTGLCRHRAILFKKLADYIGLPCRIARGCKYCAADHRSSCLVKFKDDNQLSREYVVDLVGEPGNVHGPDSSINGAYLSSMPSPFQISHLKESQSPYMDGTTCSQSPSSNHISVIPESHPYLGCEQEDQQIKEAELLKNHNSSIYSSFEQSQEETVPPPILLDLNENNKACAVLDPILPSIHEDVSKALHPATEVAFHDYVGLGKDAITVQETYKNEIIVTESSVVKTNFKQSLLCSSSQSEQLQVDNGIENQGCLPSGNIPRYLNLEPSLAMDWLEISWEELRIKERVGAGSFGTVHRAEWHGSDVAVKVLTVQDFSDDKLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLQRGSLYRLIHKPTAGEHLDSRRRLRMALDVAKGINYLHCLKPPIVHWDLKSPNLLVDKNWNVKVCDFGLSRFKANTFIPSKSVTGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWMGLGPAQVVGAVGFQNRKLAIPPNVSPVLVSLMESCWADDPAKRPSFASMVVSLKKLLKSPAEMIKMGET*	955

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo17g3009	954	MobiDBLite	consensus disorder prediction	187	223	-	-
	Amo17g3009	954	ProSiteProfiles	Protein kinase domain profile.	684	942	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo17g3009	954	Pfam	Protein tyrosine and serine/threonine kinase	684	937	IPR001245	GO:0004672\|GO:0006468
	Amo17g3009	954	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	805	817	IPR008271	GO:0004672\|GO:0006468
	Amo17g3009	954	Gene3D	Transferase(Phosphotransferase) domain 1	763	950	-	-
	Amo17g3009	954	ProSitePatterns	Protein kinases ATP-binding region signature.	690	711	IPR017441	GO:0005524
	Amo17g3009	954	SMART	serkin_6	684	942	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo17g3009	954	SUPERFAMILY	Protein kinase-like (PK-like)	662	934	IPR011009	-
	Amo17g3009	954	Gene3D	Phosphorylase Kinase; domain 1	677	762	-	-
	Amo17g3009	954	Pfam	Ethylene-responsive protein kinase Le-CTR1	259	467	-	-
	Amo17g3009	954	PANTHER	SERINE/THREONINE-PROTEIN KINASE CTR1-LIKE ISOFORM X1	151	952	-	-
	Amo17g3009	954	MobiDBLite	consensus disorder prediction	195	223	-	-
	Amo17g3009	954	PRINTS	Tyrosine kinase catalytic domain signature	758	771	IPR001245	GO:0004672\|GO:0006468
	Amo17g3009	954	PRINTS	Tyrosine kinase catalytic domain signature	799	817	IPR001245	GO:0004672\|GO:0006468
	Amo17g3009	954	PRINTS	Tyrosine kinase catalytic domain signature	865	887	IPR001245	GO:0004672\|GO:0006468
	Amo17g3009	954	PRINTS	Tyrosine kinase catalytic domain signature	909	931	IPR001245	GO:0004672\|GO:0006468
	Amo17g3009	954	Coils	Coil	203	223	-	-
	Amo17g3009	954	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	151	952	-	-
	Amo17g3009	954	CDD	STKc_MAP3K-like	690	938	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo17g3009	Amo-Chr17	133134428	133142024	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo17g3009	1	952	MAP Kinase Kinase Kinase	AT4G24480	55.859	0.0	1034

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL_CTR1-DRK-2	Amo17g3009		PK_Tyr_Ser-Thr	7.1e-64	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo17g3009	-		-	adu:107461056	1783.84

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo17g3009	17	133134428	133142024	Amo17g3009	17	133134428	133142024	ECH
	Amo17g3009	17	133134428	133142024	Amo07g0802	07	12400615	12403940	hybridization
	Amo17g3009	17	133134428	133142024	Amo17g3009	17	133134428	133142024	PCT
	Amo07g0802	07	12400615	12403940	Amo17g3009	17	133134428	133142024	PCT
	Amo07g0289	07	2616080	2620441	Amo17g3009	17	133134428	133142024	PCT