Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3006 ATGTACGGCTCCATGAACGTTCCCAATCAGATTTCCGCCGCCGAAGACAACGGCGCCGCCGCTTCCGACTCCGTCGACAACCACCACCACAATCATTACAATTCCCACGGCCTCGAGGACGGTGCCGGCGGAGTCGTCGAAGATGCCGACACCGTGTACGTTTCCGGCGGCGGAGGCCCCGACATGTCTATAATTCCCTGTGAAGATTCTAGCCAGCTCACGCTCTCGTTTCGTGGTCAAGTCTATGTCTTTGATTCCGTTACACCCGAAAAGGTTCAAGCGGTGTTATTGTTGTTGGGAGGGTGCGAAATGCCTTCGTCGGGTTCGCAATGTGCAGAGTTATCGCCTCAGAATCAGAGGGGTGCAGTGGAATTCCCTGGAAGGTGCAGTCAGCCACATCGAGCTGCATCATTGAATAGGTTCAGACAGAAGAGGAAAGAGCGATGCTTCGACAAGAAAGTTAGATATAGTGTGCGTCAAGAAGTTGCACTCAGGATGCAACGTAATAAAGGCCAATTTACTTCATCTAAGAAACAAGATGGAGCTAATAGTTGTGGTTCAGACCAAGAGTCAATGCAAGATGCTGTTCAATCAGAAACATCATGTACACACTGTGGCATAAGTTCAAAAGCCACCCCAATGATGCGGAGAGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGGCTATTTTGGTCAAATAGGGGTACTATGAGGGACCTTTCCAAGAGAAACCAGGAACACACGCTTGCCCTACCCGAGCCGGTTAATGAAGGCAATAACACGGATTGTCGAACTGCTGTCCCTGAAAATATCAATGTTGCTGCTTTCTCTGAAAATGATAACGCATCATTGGCAACTGATCGATGA 873 0.4948 MYGSMNVPNQISAAEDNGAAASDSVDNHHHNHYNSHGLEDGAGGVVEDADTVYVSGGGGPDMSIIPCEDSSQLTLSFRGQVYVFDSVTPEKVQAVLLLLGGCEMPSSGSQCAELSPQNQRGAVEFPGRCSQPHRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSSKKQDGANSCGSDQESMQDAVQSETSCTHCGISSKATPMMRRGPSGPRSLCNACGLFWSNRGTMRDLSKRNQEHTLALPEPVNEGNNTDCRTAVPENINVAAFSENDNASLATDR* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3006 290 MobiDBLite consensus disorder prediction 167 192 - -
Amo17g3006 290 SMART tify_2 66 101 IPR010399 -
Amo17g3006 290 ProSiteProfiles CCT domain profile. 134 176 IPR010402 GO:0005515
Amo17g3006 290 ProSiteProfiles GATA-type zinc finger domain profile. 196 247 IPR000679 GO:0006355|GO:0043565
Amo17g3006 290 SMART GATA_3 196 249 IPR000679 GO:0006355|GO:0043565
Amo17g3006 290 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 256 - -
Amo17g3006 290 MobiDBLite consensus disorder prediction 15 43 - -
Amo17g3006 290 PANTHER GATA TRANSCRIPTION FACTOR 25 15 267 - -
Amo17g3006 290 Pfam tify domain 70 100 IPR010399 -
Amo17g3006 290 PANTHER GATA TRANSCRIPTION FACTOR 28 15 267 IPR045280 GO:0006355
Amo17g3006 290 Gene3D - 192 251 IPR013088 GO:0006355|GO:0008270
Amo17g3006 290 Pfam CCT motif 134 176 IPR010402 GO:0005515
Amo17g3006 290 ProSiteProfiles Tify domain profile. 66 101 IPR010399 -
Amo17g3006 290 ProSitePatterns GATA-type zinc finger domain. 202 229 IPR000679 GO:0006355|GO:0043565
Amo17g3006 290 MobiDBLite consensus disorder prediction 22 36 - -
Amo17g3006 290 Pfam GATA zinc finger 202 239 IPR000679 GO:0006355|GO:0043565
Amo17g3006 290 CDD ZnF_GATA 201 247 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3006 Amo-Chr17 132934191 132938731 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g3006 66 289 Tify Gene Family AT4G24470 57.500 7.06e-90 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Amo17g3006 CCT 1.7e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3006 - - pvu:PHAVU_008G182900g 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g3006 17 132934191 132938731 Amo17g3006 17 132934191 132938731 ECH
Amo10g1799 10 64076099 64078651 Amo17g3006 17 132934191 132938731 hybridization
Amo17g3006 17 132934191 132938731 Amo10g1799 10 64076099 64078651 PCT
Amo17g3006 17 132934191 132938731 Amo17g3006 17 132934191 132938731 PCT