LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo17g2999	ATGTCGTCGCAGGCAGTGAAGTTGCGTGTCGACGACAATTATGTTGTGATGGACAATGGTATACTTGAAGTGTATTTATCCAAAAAGGGTGGATTTATCAGTGCAATACAATATAATGGTGTTGATAATTTGCTTGAAGTTCTTAATGAAGCACATGATAGAGGGTATTGGGACATTGTTTGGAATGAAGCAGATAGCACAGGAACAACCGGGATATATGAAAGGGTCGTGGGGACAAGTTATAAAGTTATAGTGCAAAATGATGAACAATTGGAGATTTCATTTACCAAAACATGGGATCGATCATCCATGGAGGAAAAGCAGTCTCCTCTAAATATTGACATTAGATATGTGATGCTACGCAATTCCTGTGGCTTGTATTGTTATAGCATCTTTGAACACCGAAAAGAATGGCCTGCTTTCAACGTACCTCAAATCAGAATGGTCTTTAAGCTTCGAAAAGAAAAGTTTAATTATATGGCTATAGCGGATAATAAGCAAAGGCTAATGCCTGTTCCAGATGACCGGTTACCAACAAGAGGAAGAACACTTGTTCCCCCTGAAGCTGTATTGCTTGTTGATCCTATTGAACCACACTTCAAGGGAGAGGTGGATGACAAGTATCAATACTCAAGCAATAACAAAGATATTAAGGTGCATGGATGGATCAGCTCCAAATCTGAAACTAATCCTGCAATGGGGTTTTGGGTAATTATACCTACCAATGAGTTCCAATCAGGTGGCCCTCTTAAACAGAACCTCACCTCTCATGTTGGACCTATTAGTCTTGCAATGTTTCTGAGTTCTCATTACGCAGGAGAGGATGTTGTTATGAGAGTCCAAAGAAATGAGTCATGGAAAAAGGTTTTTGGGCCAATCTTTATTTATCTCAACACTTCATCAGAAAACCAAGTCCAACCATCACTATGGAAGGATGCCAAAGACCAGATGAGCAAAGAAGTTCAAAGCTGGCCCTATGATTTTCCAGCTTCAGGGGATTTTCATAAGTCCCACCAACGAGGCAGTGTTTATGGCACATTAAAAGTCCAAGACAGGTTCATAAGTGATCACCAGATATTGGCAGAAGGTGCATATATTGGTCTGGCACCACCAGGAGAACCTGGATCCTGGCAAACAGAATGCAAGGGATATCAATTTTGGACTCAAACCAATAAAAGAGGCTTTTTCTCTATCAACAATATACACAGTGGGAATTACAATCTCTATGCTTGGATCCCTGGTTTCATTGGAGATTATTGTAACAATGTTGTCCTCACCATCAAGCCAGGTAATAAAGTAAATGTTGGTGAGATTGTATATGAACCCCCAAGAAATGGACCAACATTATGGGAAATAGGCATTCCTGATCGCTCTGCAGCTGAATTTTATGTTCCTGATCCTAATCCAAATTACATTAACACACTTTATCTCAATCATCCAGATAGGTTTAGGCAGCATGGATTATGGGAAAGATATGCAGATTTATATCCAAATGAAGATTTGATTTACACAGTTGGACATAGTGATTATACAAAACATTGGTTCTTTGCCCATGTTACCAGGAAGAGAGATGATGGCACTTACCATGGAACAACATGGCAAATTAAGTTCAAGCTTCATAATGTTCAGAAAAATGGAACTTATAAACTGCGACTAGCACTTGCAGCCGTTAATTTCTCCCAATTACAGGTTAGAGTGAATAATCCAAAAGAAGATCCACCAATGTTTACAAGTGGGTTGATTGGGAAGGACAACGCCATAGCTAGACATGGAATTCATGGACTCTATAGACTATACAACATTGATGTGTCATCTCATTTACTAGTCAAAGATGATAACATTATATATCTTACACAAACTATAGCTAATGGTCCCTTTCAAGGCATAATGTATGATTATATTCGTTTGGAAGCTCCTCCTTCTCATAAATAA	1932	0.3892	MSSQAVKLRVDDNYVVMDNGILEVYLSKKGGFISAIQYNGVDNLLEVLNEAHDRGYWDIVWNEADSTGTTGIYERVVGTSYKVIVQNDEQLEISFTKTWDRSSMEEKQSPLNIDIRYVMLRNSCGLYCYSIFEHRKEWPAFNVPQIRMVFKLRKEKFNYMAIADNKQRLMPVPDDRLPTRGRTLVPPEAVLLVDPIEPHFKGEVDDKYQYSSNNKDIKVHGWISSKSETNPAMGFWVIIPTNEFQSGGPLKQNLTSHVGPISLAMFLSSHYAGEDVVMRVQRNESWKKVFGPIFIYLNTSSENQVQPSLWKDAKDQMSKEVQSWPYDFPASGDFHKSHQRGSVYGTLKVQDRFISDHQILAEGAYIGLAPPGEPGSWQTECKGYQFWTQTNKRGFFSINNIHSGNYNLYAWIPGFIGDYCNNVVLTIKPGNKVNVGEIVYEPPRNGPTLWEIGIPDRSAAEFYVPDPNPNYINTLYLNHPDRFRQHGLWERYADLYPNEDLIYTVGHSDYTKHWFFAHVTRKRDDGTYHGTTWQIKFKLHNVQKNGTYKLRLALAAVNFSQLQVRVNNPKEDPPMFTSGLIGKDNAIARHGIHGLYRLYNIDVSSHLLVKDDNIIYLTQTIANGPFQGIMYDYIRLEAPPSHK*	644

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Amo17g2999	643	CDD	RGL4_M	339	438	IPR029413	-
Amo17g2999	643	Gene3D	-	446	637	-	-
Amo17g2999	643	Pfam	Polysaccharide lyase family 4, domain II	362	434	IPR029413	-
Amo17g2999	643	SUPERFAMILY	Galactose-binding domain-like	445	637	IPR008979	-
Amo17g2999	643	Pfam	Rhamnogalacturonate lyase family	6	204	IPR010325	-
Amo17g2999	643	Gene3D	-	336	436	-	-
Amo17g2999	643	Pfam	Polysaccharide lyase family 4, domain III	448	636	IPR029411	-
Amo17g2999	643	PANTHER	RHAMNOGALACTURONATE LYASE FAMILY PROTEIN	1	642	-	-
Amo17g2999	643	CDD	RGL4_C	450	637	-	-
Amo17g2999	643	SUPERFAMILY	Galactose mutarotase-like	11	301	IPR011013	GO:0003824\|GO:0005975\|GO:0030246

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo17g2999	Amo-Chr17	132731426	132752415	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo17g2999	6	639	Polysaccharide Lyase	AT1G09890	60.597	0.0	815

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo17g2999	K18195		-	gmx:100815677	996.497

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo17g2999	17	132731426	132752415	Amo07g1880	07	56169748	56183455	hybridization

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