Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2999 ATGTCGTCGCAGGCAGTGAAGTTGCGTGTCGACGACAATTATGTTGTGATGGACAATGGTATACTTGAAGTGTATTTATCCAAAAAGGGTGGATTTATCAGTGCAATACAATATAATGGTGTTGATAATTTGCTTGAAGTTCTTAATGAAGCACATGATAGAGGGTATTGGGACATTGTTTGGAATGAAGCAGATAGCACAGGAACAACCGGGATATATGAAAGGGTCGTGGGGACAAGTTATAAAGTTATAGTGCAAAATGATGAACAATTGGAGATTTCATTTACCAAAACATGGGATCGATCATCCATGGAGGAAAAGCAGTCTCCTCTAAATATTGACATTAGATATGTGATGCTACGCAATTCCTGTGGCTTGTATTGTTATAGCATCTTTGAACACCGAAAAGAATGGCCTGCTTTCAACGTACCTCAAATCAGAATGGTCTTTAAGCTTCGAAAAGAAAAGTTTAATTATATGGCTATAGCGGATAATAAGCAAAGGCTAATGCCTGTTCCAGATGACCGGTTACCAACAAGAGGAAGAACACTTGTTCCCCCTGAAGCTGTATTGCTTGTTGATCCTATTGAACCACACTTCAAGGGAGAGGTGGATGACAAGTATCAATACTCAAGCAATAACAAAGATATTAAGGTGCATGGATGGATCAGCTCCAAATCTGAAACTAATCCTGCAATGGGGTTTTGGGTAATTATACCTACCAATGAGTTCCAATCAGGTGGCCCTCTTAAACAGAACCTCACCTCTCATGTTGGACCTATTAGTCTTGCAATGTTTCTGAGTTCTCATTACGCAGGAGAGGATGTTGTTATGAGAGTCCAAAGAAATGAGTCATGGAAAAAGGTTTTTGGGCCAATCTTTATTTATCTCAACACTTCATCAGAAAACCAAGTCCAACCATCACTATGGAAGGATGCCAAAGACCAGATGAGCAAAGAAGTTCAAAGCTGGCCCTATGATTTTCCAGCTTCAGGGGATTTTCATAAGTCCCACCAACGAGGCAGTGTTTATGGCACATTAAAAGTCCAAGACAGGTTCATAAGTGATCACCAGATATTGGCAGAAGGTGCATATATTGGTCTGGCACCACCAGGAGAACCTGGATCCTGGCAAACAGAATGCAAGGGATATCAATTTTGGACTCAAACCAATAAAAGAGGCTTTTTCTCTATCAACAATATACACAGTGGGAATTACAATCTCTATGCTTGGATCCCTGGTTTCATTGGAGATTATTGTAACAATGTTGTCCTCACCATCAAGCCAGGTAATAAAGTAAATGTTGGTGAGATTGTATATGAACCCCCAAGAAATGGACCAACATTATGGGAAATAGGCATTCCTGATCGCTCTGCAGCTGAATTTTATGTTCCTGATCCTAATCCAAATTACATTAACACACTTTATCTCAATCATCCAGATAGGTTTAGGCAGCATGGATTATGGGAAAGATATGCAGATTTATATCCAAATGAAGATTTGATTTACACAGTTGGACATAGTGATTATACAAAACATTGGTTCTTTGCCCATGTTACCAGGAAGAGAGATGATGGCACTTACCATGGAACAACATGGCAAATTAAGTTCAAGCTTCATAATGTTCAGAAAAATGGAACTTATAAACTGCGACTAGCACTTGCAGCCGTTAATTTCTCCCAATTACAGGTTAGAGTGAATAATCCAAAAGAAGATCCACCAATGTTTACAAGTGGGTTGATTGGGAAGGACAACGCCATAGCTAGACATGGAATTCATGGACTCTATAGACTATACAACATTGATGTGTCATCTCATTTACTAGTCAAAGATGATAACATTATATATCTTACACAAACTATAGCTAATGGTCCCTTTCAAGGCATAATGTATGATTATATTCGTTTGGAAGCTCCTCCTTCTCATAAATAA 1932 0.3892 MSSQAVKLRVDDNYVVMDNGILEVYLSKKGGFISAIQYNGVDNLLEVLNEAHDRGYWDIVWNEADSTGTTGIYERVVGTSYKVIVQNDEQLEISFTKTWDRSSMEEKQSPLNIDIRYVMLRNSCGLYCYSIFEHRKEWPAFNVPQIRMVFKLRKEKFNYMAIADNKQRLMPVPDDRLPTRGRTLVPPEAVLLVDPIEPHFKGEVDDKYQYSSNNKDIKVHGWISSKSETNPAMGFWVIIPTNEFQSGGPLKQNLTSHVGPISLAMFLSSHYAGEDVVMRVQRNESWKKVFGPIFIYLNTSSENQVQPSLWKDAKDQMSKEVQSWPYDFPASGDFHKSHQRGSVYGTLKVQDRFISDHQILAEGAYIGLAPPGEPGSWQTECKGYQFWTQTNKRGFFSINNIHSGNYNLYAWIPGFIGDYCNNVVLTIKPGNKVNVGEIVYEPPRNGPTLWEIGIPDRSAAEFYVPDPNPNYINTLYLNHPDRFRQHGLWERYADLYPNEDLIYTVGHSDYTKHWFFAHVTRKRDDGTYHGTTWQIKFKLHNVQKNGTYKLRLALAAVNFSQLQVRVNNPKEDPPMFTSGLIGKDNAIARHGIHGLYRLYNIDVSSHLLVKDDNIIYLTQTIANGPFQGIMYDYIRLEAPPSHK* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2999 643 CDD RGL4_M 339 438 IPR029413 -
Amo17g2999 643 Gene3D - 446 637 - -
Amo17g2999 643 Pfam Polysaccharide lyase family 4, domain II 362 434 IPR029413 -
Amo17g2999 643 SUPERFAMILY Galactose-binding domain-like 445 637 IPR008979 -
Amo17g2999 643 Pfam Rhamnogalacturonate lyase family 6 204 IPR010325 -
Amo17g2999 643 Gene3D - 336 436 - -
Amo17g2999 643 Pfam Polysaccharide lyase family 4, domain III 448 636 IPR029411 -
Amo17g2999 643 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 642 - -
Amo17g2999 643 CDD RGL4_C 450 637 - -
Amo17g2999 643 SUPERFAMILY Galactose mutarotase-like 11 301 IPR011013 GO:0003824|GO:0005975|GO:0030246
Amo17g2999 643 Gene3D - 5 314 IPR014718 GO:0030246
Amo17g2999 643 CDD RGL4_N 6 301 - -
Amo17g2999 643 SUPERFAMILY Starch-binding domain-like 336 436 IPR013784 GO:0030246
Amo17g2999 643 PANTHER LG27/30-LIKE GENE 1 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2999 Amo-Chr17 132731426 132752415 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2999 6 639 Polysaccharide Lyase AT1G09890 60.597 0.0 815
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2999 K18195 - gmx:100815677 996.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2999 17 132731426 132752415 Amo07g1880 07 56169748 56183455 hybridization