Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2995 ATGTCTACCCAAGGGGTGCGGTTGCACATTCAAGATCGCTATGTGGTGATGGATAATGGTATAGTTCAAGTGACGTTATCGAATCCAGGTGGAATTGTTACTGGGATAGCATATAATGGTGTTGATAATTTGCTTGAAGTTCTCAACAAGGAGACTAATAGAGGGTACTGGGATCTTGTTTGGGGTGCACCAGGAATCAAAGGAACCTTTGATGTGTATGGCAACAGTACCTTCTTTGAATGTGAACTGAAGATGTTATGCTCCAGGATTCAAGGAACGTTTTTCAGAGTTATAGTTCAAAATGATGAACAAGTTGAGGTTTCATTTACAAGAATGTGGGATCCTTCTCTTGAGGGAAAGTTTGTCCCCTTAAACATTGACAAAAGATTCATACTGCTCCGAGGTTCATCAGGCTTCTACTCTTATGGAATTTATGAGCACTTAAGTGGATGGCCAGACTTCGATCTTAGTGAAACAAGGATCACTTTCAAGCTTAGAAAACACATGTTTCAATACATGGCTATGGCAGACAACAGGCGAAGGCTTATGCCTCTTCCGGATGATCGATTACCAGGGAGATGCCAAACCTTGGCATACCCAGAAGCTGTCAAATTAGTCAATCCCAAGGATCCTCAACTGAAAGATGAGGTGGATGACAAGTATCAATATTCCTGCGACAACATAGATAATAAAGTCCATGGGTGGATATCTTTCAATCCACCAGTGGGATTTTGGCAGATCACACCAAGTGATGAGTTTCGTTCTGGTGGACCGCACAAGCAGAATTTGACCTCACATGTAGGCCCCACCACACTTGCAATGTTTCTTAGTGGTCACTATGCGGGGCAAGATTTGAACCCCAAATTCAAAGATGGTGAACCATGGAAGAAGGTTTTTGGTCCAGTATTCATATATCTTAATTCTGGACCAGTTGGTGATGACCCACATTGGCTCTGGGAGGACGCCAAAATACAGATGATGAATGAAGTTCAAAGCTGGCCATATTCTTTCCCAGCTTCAGAGGATTTTCCAAAGTCGGATCAAAGGGGCAACGTTGGTGGCAGACTGCTCGTCTTAGACAGATATGTCAGCACAGACTTAATATCTGCAAATGGTGCTTATGTTGGTCTAGCCCCGCCAGGAGATGCCGGGTCATGGCAAAGAGAATGCAAGCACTATCAATTCTGGACCAGAGCAGATGAGAATGGATTTTTTACAATCAGGAACATACGTGCTGGCGACTATAACCTTTATGCCTGGGTTCCTGGTTTTGTTGGGGACTACAAATTGGATGATTTGATGAAGATAACCCCAGGTTCTAATATTGAAGTGGGTGAACTGGTATATGAGCCTCCAAGGGTTGGTCCAACATTGTGGGAAATAGGTATTCCTGATCGAACTGCTGCAGAATTTTATGTTCCTGATCCCAAGCCAGAACATATTAATAAGCTTTTTATCAACCATCCTGAAAGGTTCAGACAGTACGGATTATGGGAAAGGTATATAGAATTGTATCCGGAATCAGATTTGGTTTACACAGTTGGTGTCAGTGACTATAGGAGAGATTGGTTTTATGCCCATATTCCCAGAAAGAAAGAGGATAATACCCATCAAGGAACAACTTGGCAAATCAAGTTTGAACTCAATGATGTGGTTCAAGGAAGTACTTATACACTGAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTGCAGATTCGAGTAAATGATCCGAATGCAAGGCGTCCTCTGTTTACGACTGGGCTAATAGGGAGGGATAACTCGATTGCAAGACATGGAATTCATGGACTCTATTGGCTGTACAGTGTGAATGTACCTGGTTCTCTTCTTATAAATGGCCCCAACACTTTATATTTTACTCAACCACGTTGCAACAATTGTTTCCAGGGTATCATGAATTGTATTATCACCATGACAACACTACTCGGGGTGCAACTCACCATTCAAGATCGTCATGTGGTGGTGGAGAATGGCATAGTAAGAGTAACGATTTCAAATCCAGAAGGAATAGTGACTGGAATTCAGTATAATGGAATCGACAACTTGCTTGAAGTTTTGAATGACGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCACCAACAAGTACAGGAACCACTGGCAAATTTGACGTAATAAAAGGAACCGCTTTCAAAGTAATAATGGAAAATGAGGATCAAGTTGAGATTTCTTTCACAAGAACATGGGACGTGTCCCTCAAAGACCAGCTAGTTCCTTTGAATATCGATAAAAGGTTCATAATGCTTCGTGGTACCTCGGGGTTCTATTCATATGCTATTTACGAACACTTAAGCGAGTGGCCTGCTTTCAATCTTGACGAAACGAGAATTGCTTTCAAGCTCAGAAAAGACAAGTTCCATTATATGGCAATGGCGGATAACCGACAAAGAAATATGCCACTTCCTGATGATCGAGTGCCACCAAGAGGCCAACCCCTTGCATATCCCGAAGCAGTTCTTTTTGGCGATCCTCTTGAACCTGAATTCAAAGGGGAGGTAGATGACAAGTACCAATATTCATGTGACAACAAAGATAGCCAAGTTCATGGATGGGTGTGCATGGATCCTGCCGTTGGATTTTGGCTAATTACGCCCAGCAATGAGTTCCGTTCTGGTGGGCCCCTCAAACAAAACTTAACCTCCCACGTTGGACCCACCACGCTCGCTGTGTTTCTAAGTGCCCATTATAGTGGAGAGGACTTGGTGCCAAAATTCAAAGAAGGAGAAGCATGGAAGAAGGTTTTTGGTCCAGTTTTCATTTATTTGAATTCTCCTAATGACGATAATGGTGATGTTGAACCCCATAAAATGCTCTGGGAAGATGCTAAACTTCAGATGAATGTAGAAGTACAGAGTTGGCCTTACACTTTTCCCGAATCAGATGATTACCCAAAGTGGTACGAACGGGGTATTGTTACTGGCAGGTTATTGGTTAGAGAGAGGTATATAAGCGATGATGACTACATAGCAGCAAAAGGTGCATATGTTGGTTTGGCCCCCCCGGGAGATGTTGGATCATGGCAAAGAGAATGCAAGAATTATCAGTTCTGGAGTGAAGCAGATGAAGATGGGTATTTCTCCATCAGCAATGTACGTGCTGGTGACTATAATTTATATGCATGGGTACCTGGTTTTATTGGAGACTACAAATACAATAATTCAATTATAACCATAGCGGAAGGGTCTACTACTTTCACTGAATTGGGTGATCTTGTTTATGAGCCACCAAGAGATGGACCAACACTTTGGGAAATAGGGATTCCAGATCGTACAGCTGCAGAGTTCTATGTTCCTGATCCAAATCCCAAATACATCAACAAACTCTACGTTAATCATCCTCAAAAATTTAGGCAATATGGATTATGGGAGAGATATGCAGAATTGTACCCCGACAAAGATTTAATCTACACTGTTGGAGTTAGTGATTACACCAAAGATTGGTTCTTTGCCCAAGTTACAAGGAAGAAAGATGAGAATACATATCAAGGAACCACTTGGCAGATCAAGTTTCAGCTTTCCAATGTAAACAAAACCGGCACCTATAAACTGCGCCTGGCTTTGGCTTCCGCTACATTTTCTGAACTCCAGGTCCGAGTTAATGATCCAAAGGCAAGTCGTCCTCTATTCTCAAGTGGGTTGATAGGAAGGGATAACTCAATTGCAAGGCATGGAATTCATGGACTCTATTGGCTTTTCAATGTGGACATTCAAGGAACCAAACTTGTTGAAGGAGATAACACCATTTTTCTAACACAAGCTAGAGGCAATACCCCATTTCAGAACATCATGTATGATTACATTCGTTTGGAAGGTCCACCACAACCATCTAGTTTAAATAAAAACATTTAA 3894 0.4201 MSTQGVRLHIQDRYVVMDNGIVQVTLSNPGGIVTGIAYNGVDNLLEVLNKETNRGYWDLVWGAPGIKGTFDVYGNSTFFECELKMLCSRIQGTFFRVIVQNDEQVEVSFTRMWDPSLEGKFVPLNIDKRFILLRGSSGFYSYGIYEHLSGWPDFDLSETRITFKLRKHMFQYMAMADNRRRLMPLPDDRLPGRCQTLAYPEAVKLVNPKDPQLKDEVDDKYQYSCDNIDNKVHGWISFNPPVGFWQITPSDEFRSGGPHKQNLTSHVGPTTLAMFLSGHYAGQDLNPKFKDGEPWKKVFGPVFIYLNSGPVGDDPHWLWEDAKIQMMNEVQSWPYSFPASEDFPKSDQRGNVGGRLLVLDRYVSTDLISANGAYVGLAPPGDAGSWQRECKHYQFWTRADENGFFTIRNIRAGDYNLYAWVPGFVGDYKLDDLMKITPGSNIEVGELVYEPPRVGPTLWEIGIPDRTAAEFYVPDPKPEHINKLFINHPERFRQYGLWERYIELYPESDLVYTVGVSDYRRDWFYAHIPRKKEDNTHQGTTWQIKFELNDVVQGSTYTLRVAIASATLAELQIRVNDPNARRPLFTTGLIGRDNSIARHGIHGLYWLYSVNVPGSLLINGPNTLYFTQPRCNNCFQGIMNCIITMTTLLGVQLTIQDRHVVVENGIVRVTISNPEGIVTGIQYNGIDNLLEVLNDESNRGYWDLVWSSPTSTGTTGKFDVIKGTAFKVIMENEDQVEISFTRTWDVSLKDQLVPLNIDKRFIMLRGTSGFYSYAIYEHLSEWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRVPPRGQPLAYPEAVLFGDPLEPEFKGEVDDKYQYSCDNKDSQVHGWVCMDPAVGFWLITPSNEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKEGEAWKKVFGPVFIYLNSPNDDNGDVEPHKMLWEDAKLQMNVEVQSWPYTFPESDDYPKWYERGIVTGRLLVRERYISDDDYIAAKGAYVGLAPPGDVGSWQRECKNYQFWSEADEDGYFSISNVRAGDYNLYAWVPGFIGDYKYNNSIITIAEGSTTFTELGDLVYEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLYVNHPQKFRQYGLWERYAELYPDKDLIYTVGVSDYTKDWFFAQVTRKKDENTYQGTTWQIKFQLSNVNKTGTYKLRLALASATFSELQVRVNDPKASRPLFSSGLIGRDNSIARHGIHGLYWLFNVDIQGTKLVEGDNTIFLTQARGNTPFQNIMYDYIRLEGPPQPSSLNKNI* 1298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2995 1297 CDD RGL4_N 6 309 - -
Amo17g2995 1297 Gene3D - 9 320 IPR014718 GO:0030246
Amo17g2995 1297 Gene3D - 651 950 IPR014718 GO:0030246
Amo17g2995 1297 Pfam Rhamnogalacturonate lyase family 6 217 IPR010325 -
Amo17g2995 1297 Pfam Rhamnogalacturonate lyase family 651 848 IPR010325 -
Amo17g2995 1297 SUPERFAMILY Galactose mutarotase-like 653 941 IPR011013 GO:0003824|GO:0005975|GO:0030246
Amo17g2995 1297 Pfam Polysaccharide lyase family 4, domain III 457 639 IPR029411 -
Amo17g2995 1297 Pfam Polysaccharide lyase family 4, domain III 1096 1284 IPR029411 -
Amo17g2995 1297 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 648 1289 - -
Amo17g2995 1297 SUPERFAMILY Starch-binding domain-like 390 444 IPR013784 GO:0030246
Amo17g2995 1297 CDD RGL4_N 653 939 - -
Amo17g2995 1297 Pfam Polysaccharide lyase family 4, domain II 1007 1079 IPR029413 -
Amo17g2995 1297 Pfam Polysaccharide lyase family 4, domain II 371 443 IPR029413 -
Amo17g2995 1297 CDD RGL4_C 1098 1285 - -
Amo17g2995 1297 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 644 - -
Amo17g2995 1297 CDD RGL4_M 983 1086 IPR029413 -
Amo17g2995 1297 SUPERFAMILY Galactose-binding domain-like 455 644 IPR008979 -
Amo17g2995 1297 CDD RGL4_M 348 447 IPR029413 -
Amo17g2995 1297 SUPERFAMILY Starch-binding domain-like 1027 1080 IPR013784 GO:0030246
Amo17g2995 1297 Gene3D - 347 443 - -
Amo17g2995 1297 Gene3D - 983 1083 - -
Amo17g2995 1297 SUPERFAMILY Galactose-binding domain-like 1093 1285 IPR008979 -
Amo17g2995 1297 Gene3D - 455 642 - -
Amo17g2995 1297 Gene3D - 1094 1285 - -
Amo17g2995 1297 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 648 1289 - -
Amo17g2995 1297 SUPERFAMILY Galactose mutarotase-like 19 313 IPR011013 GO:0003824|GO:0005975|GO:0030246
Amo17g2995 1297 CDD RGL4_C 459 639 - -
Amo17g2995 1297 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2995 Amo-Chr17 132658114 132672682 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2995 1 639 Polysaccharide Lyase AT1G09890 67.395 0.0 885
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2995 K18195 - gmx:100793563 1152.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2995 17 132658114 132672682 Amo17g2995 17 132658114 132672682 ECH