Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2992 ATGGGGAGAGGGAAGATCGTGATAAGGAGGATCGATAACTCGACGAGTAGGCAAGTAACGTTCTCGAAGCGGAGAAGCGGTTTGCTGAAGAAGGCGAAGGAGCTTTCGATTCTTTGCGATGCTGAGGTTGGAGTTACGATCTTCTCCAGCACCGGAAAACTCTATGATTACGCCAGTTCCAGATTTTGGGAACTGGCGTCACAGATTAACAGCACGATGTGA 222 0.491 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVTIFSSTGKLYDYASSRFWELASQINSTM* 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2992 73 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Amo17g2992 73 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL16 1 68 - -
Amo17g2992 73 CDD MADS_MEF2_like 2 62 IPR033896 GO:0000977|GO:0045944
Amo17g2992 73 Gene3D - 13 72 IPR036879 GO:0003677|GO:0046983
Amo17g2992 73 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo17g2992 73 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo17g2992 73 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo17g2992 73 SUPERFAMILY SRF-like 2 69 IPR036879 GO:0003677|GO:0046983
Amo17g2992 73 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Amo17g2992 73 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 68 - -
Amo17g2992 73 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo17g2992 73 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2992 Amo-Chr17 132612546 132613755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2992 1 60 MADS-box Gene Family AT2G14210 96.667 1.84e-36 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo17g2992 SRF-TF 4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2992 K09264 - ath:AT2G14210 114.005