Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2970 ATGGGAACTGGTTGGAGAAGAGCCTTTTGCACACGCGACCCAGAATCCACCCTATCCGATAACAAGCATCGTAGAAGCTCAAGCCCAAGCCCAAGCCCGAGAAGCTGTGGCAGACTCGGTTTCCTCAGCAATCCTTCCACTCCAAGGTTGCATCAACAGCAATCTCAATCCGTTTCAAGCCCAAGCCTGCGTTGCCGTACAATCGCCGAAGCAGCTGCATCAAATGAGAGCCCCAGAGTTGCAAGCAAATTAAGCACGCCAAGAGCAAACAAGTCCCCCAAGACGCTTGCAGCTTCAAATCCATCTTCACCTCGTTCCCCTCTCAAATTGTCCCTATTCAAGAACAGCTTCAAATTCAGGAGTAGCTGCGGAATATGCTTGAACAGCGTGAAGACGGGACAAGGCACTGCGATATACACTGCAGAATGTGCCCACGCTTTCCACTTTCCTTGCATAGCTTCACATGTTCGCAAGCAAGGTAGCCTTGTGTGCCCAGTTTGCAACGCTACGTGGAAAGACGTGCCACTTCTTGCTGCGCACAAGAACCTCCCTTCAGAGTCTCAGAATGCCAGCGACATGAAGAATCCCACAGAAAATAACAATTCCTCAGTTTTCAACACAAACCCTGTGGAGCCACCTCAGCAACAGAAGCATTCAGAGTCGATTAGGTTCTACGACGATGATGAACCTCTCCTTTCTCCGACCTCCGGCGGCAGGATTATTCCGATTCCTGAAGCTGATGAAAAAGCGGAAGACGAAGACGACGAAGACGATGCCGGTGAATTTCAAGGATTCTTCGTTAATCCAAAATCTTCTGCTTCCTCAGTCAAATCCTACTCTGACGAGTTTCAAAATATTGAGGCAGATTCCAGGACCGTTCAGGTGAAGCTCATGCCGGAGTGTGCCGTCATTTCCGTCTCAAGAACTCACGAGACCTACGCTTTGGTGCTCAAAGTGAAGGCTCCGCCACCACCGCCGCTTACTCCGGTGCGGAACATGTCGCAACAGCGAGCACCGATAGATCTTGTGACGGTTCTTGACGTTGGAGGAACCATGACCGGCGCGAAGCTGCTCATGCTGAAGAGAGCGATGCGTTTGGTTATCTCATCACTCGGCCCCGCAGATAGGCTCTCGATCGTGGCCTTCTCCGCGTCGCCCAAACGGCTCTTACCGTTGCGGAGAATGACACCTCAGGGACAGCGCATGGCTCGCCGCATCCTCGACCGCCTTGTCGCTGGCCAAGGCGGAAACGGCAACGCCGGCGAGGCACTCCGCAAAGCGACGAAAGTCTTGGAAGATCGGAGAGAGAGAAATCCTGTAGCGAGCGTGATGCTCCTGTCGGACGGCCAAGACGAGAGAGTCCAAGCAAGCAACAAATCCAATCAACGAAAACCATCAAGCCACGTGTCATCGACTCGGTTCGCACACATCGAGATCCCGGTTCACTCATCCGGTTTCGGCACAAAAAGCGGTTACAGCAACGAACCTTCAGAGGACGCGTTCGCGAAGCGCGTGGGCGGCTTATTAAGCGTGGTGGTTCAAGATCTTAGAGTCCAGCTCGGCGTGCAGTGCGACTCCGCTGAAATCAGTGCTATATACTCTTGCGGCGGAAGGCCAACGCTTCTGAGCTGCGGCGCCGTGAGGCTCGGCGATCTTTACGCGGAGGAAGAGAGGGAGCTCCTTGTTGAGCTTCGAGTTCCCGTTCCCGCTTTCACCACTCGCCACGTCATCACCGTACGGTGCCTATACAAGGACCCTGCCAGCCAAGAGATTGTGTACGGTCGGGAGCAGGGACTCGTGGTGCCACCACCGCAGAGCACGCGTTGTTCTTCCGGCGCAAGAGTCGAGAAGCTGAGGAACTTGTTCATCACGACGCGCGCCGTAGCTGAGTCTAGAAGACTGGTGGATCACGGTAACGATTTCACCAGCGCGCACCATTTGCTTGCTTCGGCTCGCGCGCTTATTTTGCAATCTGGTTCGGGTTCGGAATATGTTCGAGGTTTGGAGGCTGAGCTGGCAGAGATTCATTGGCTGAAGCATCAGAAGGTTCAGATGGAGCAGGTTCAGGTCCAGCAGCAGCATATGATAGCGATGCAGTCGCGGCGGAGAGGGGGAGATCATAGGGATAAGGAAACGAGTTTTGTGGATGAGAACGGCGAGCCGCTTACGCCGACATCGGCTTGGCAAGCCGCCGAGAAGCTGGCTAAGATGGCCATGATCAAGAAGTCATTGAATAGAGTCAGCGACTTGCACGGCTTTGAAAATGCTAGGTTTTAG 2277 0.5384 MGTGWRRAFCTRDPESTLSDNKHRRSSSPSPSPRSCGRLGFLSNPSTPRLHQQQSQSVSSPSLRCRTIAEAAASNESPRVASKLSTPRANKSPKTLAASNPSSPRSPLKLSLFKNSFKFRSSCGICLNSVKTGQGTAIYTAECAHAFHFPCIASHVRKQGSLVCPVCNATWKDVPLLAAHKNLPSESQNASDMKNPTENNNSSVFNTNPVEPPQQQKHSESIRFYDDDEPLLSPTSGGRIIPIPEADEKAEDEDDEDDAGEFQGFFVNPKSSASSVKSYSDEFQNIEADSRTVQVKLMPECAVISVSRTHETYALVLKVKAPPPPPLTPVRNMSQQRAPIDLVTVLDVGGTMTGAKLLMLKRAMRLVISSLGPADRLSIVAFSASPKRLLPLRRMTPQGQRMARRILDRLVAGQGGNGNAGEALRKATKVLEDRRERNPVASVMLLSDGQDERVQASNKSNQRKPSSHVSSTRFAHIEIPVHSSGFGTKSGYSNEPSEDAFAKRVGGLLSVVVQDLRVQLGVQCDSAEISAIYSCGGRPTLLSCGAVRLGDLYAEEERELLVELRVPVPAFTTRHVITVRCLYKDPASQEIVYGREQGLVVPPPQSTRCSSGARVEKLRNLFITTRAVAESRRLVDHGNDFTSAHHLLASARALILQSGSGSEYVRGLEAELAEIHWLKHQKVQMEQVQVQQQHMIAMQSRRRGGDHRDKETSFVDENGEPLTPTSAWQAAEKLAKMAMIKKSLNRVSDLHGFENARF* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2970 758 ProSiteProfiles Zinc finger RING-type profile. 123 168 IPR001841 -
Amo17g2970 758 MobiDBLite consensus disorder prediction 184 219 - -
Amo17g2970 758 SUPERFAMILY vWA-like 339 518 IPR036465 -
Amo17g2970 758 MobiDBLite consensus disorder prediction 1 106 - -
Amo17g2970 758 Gene3D von Willebrand factor, type A domain 341 517 IPR036465 -
Amo17g2970 758 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 177 IPR013083 -
Amo17g2970 758 MobiDBLite consensus disorder prediction 442 471 - -
Amo17g2970 758 MobiDBLite consensus disorder prediction 700 716 - -
Amo17g2970 758 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 758 - -
Amo17g2970 758 SMART ring_2 123 167 IPR001841 -
Amo17g2970 758 SMART VWA_4 339 524 IPR002035 -
Amo17g2970 758 MobiDBLite consensus disorder prediction 451 471 - -
Amo17g2970 758 MobiDBLite consensus disorder prediction 78 106 - -
Amo17g2970 758 Pfam von Willebrand factor type A domain 341 453 IPR002035 -
Amo17g2970 758 MobiDBLite consensus disorder prediction 698 722 - -
Amo17g2970 758 MobiDBLite consensus disorder prediction 23 64 - -
Amo17g2970 758 CDD RING-H2 123 168 - -
Amo17g2970 758 MobiDBLite consensus disorder prediction 184 259 - -
Amo17g2970 758 ProSiteProfiles VWFA domain profile. 341 487 IPR002035 -
Amo17g2970 758 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 3 758 - -
Amo17g2970 758 Pfam RING-like zinc finger 123 152 IPR001841 -
Amo17g2970 758 SUPERFAMILY RING/U-box 117 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2970 Amo-Chr17 132095426 132098598 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2970 - - lja:Lj3g3v3131860.1 984.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2970 17 132095426 132098598 Amo07g1934 07 57915639 57917829 hybridization