Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2948 TCCGAAAAGTCAAGAGTTCAATTCTTGGTGAACCCCAAAATCAACTTAAACTTTTGGGATGAGTATGAAATCAGCCTTGATGAAATTCTGTATCAGAAGCTCAATTGGAGTCTCAGATTTAAGATTATTTTGGGAACTGCCGAAAGGATCATTCACAAGGATATCAAGGTTTCTAATATTCTTCTCTTTGAGACTTTTGAGCCTCAGACATCTGATTTTGGCCTAGCAAAGTGGTTACCTGACCAATGGACTCACCATACTGTTTCCAAAGTAGAAGGCACATTCAGGTACCTTTCCCCTAAATTCTTCATGCATGGAATAGTAGATGAGAAAACTGATGTATATGCTTATGGTGTGTTATTATTGGAGCTAATCACTGGAAGACAAGCTTTGGATATCTCACAAAAATTTTTTATCATGTGGGCAATGATAAATGATATATTCGCTCACCGCAAGCCTGCAAGGGTTTTTGGAAGTTATGCTACCTTGGCCATAGGAACTGAGTGGATTTTTCGCCCCAAGCAAGAAGTGATCTCTCCGCATTATATGACAACTAGGGTAGAGGAGTGGGCAGTGGCCCTTTCTCTTTGA 591 0.3993 SEKSRVQFLVNPKINLNFWDEYEISLDEILYQKLNWSLRFKIILGTAERIIHKDIKVSNILLFETFEPQTSDFGLAKWLPDQWTHHTVSKVEGTFRYLSPKFFMHGIVDEKTDVYAYGVLLLELITGRQALDISQKFFIMWAMINDIFAHRKPARVFGSYATLAIGTEWIFRPKQEVISPHYMTTRVEEWAVALSL* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2948 196 Coils Coil 196 196 - -
Amo17g2948 196 SUPERFAMILY Protein kinase-like (PK-like) 25 144 IPR011009 -
Amo17g2948 196 PANTHER OS08G0249100 PROTEIN 25 142 - -
Amo17g2948 196 ProSiteProfiles Protein kinase domain profile. 1 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2948 196 Pfam Protein kinase domain 48 146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2948 196 ProSitePatterns Serine/Threonine protein kinases active-site signature. 50 62 IPR008271 GO:0004672|GO:0006468
Amo17g2948 196 Gene3D Transferase(Phosphotransferase) domain 1 23 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2948 Amo-Chr17 131790135 131792628 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2948 25 142 Receptor kinase-like Gene Family AT1G56120 43.796 6.43e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Amo17g2948 Pkinase 2.7e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2948 - - aip:110271812 218.779