Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2945 ATGATGATGGCCTTCTCTAATAATAATGACCAAGAACTTGGACTTGGTCTTGGTCTTAGTCTTGTTCATGGTGAAAACTGTAGGCAGAAGAAGAAGGAGGAGGAGGAGGGTCCATGCAGCAATATTAAGGCATACCCATCTCTTACTTTAGGACCAGAACAGGATTCTAGATCTTCTCAAAGCGCAGGTGTTTCTTCATTTTCCAACTCATCGTCTAGCATCAAGAGGGAGAGAGACGAAGAATTCTTGCTGGACTTAGACGAAGAAGAAAACAAGAAGAATGGTAACCCCAGAAAGAAACTTAGGCTCACCAAACAACAATCTGCACTCTTAGAGGATAGCTTCATACACCATTCTACTCTGAATCCGAAGCAAAAGCAAGAGTTGGCAAAGAAGCTCAATCTGAGAGCGAGGCAAGTGGAGGTGTGGTTTCAGAACAGGAGAGCAAGGACAAAATTGAAGCAAACGGAAGCGGAGTGTGAGATATTGAAGAAGTGGTGTGAGAGGCTAAGAGAAGAGAACAAGAGGTTGCAAAAGGAGCTGCAACATCTAAAATCCATGAAAACAAACAACAAATAA 579 0.4266 MMMAFSNNNDQELGLGLGLSLVHGENCRQKKKEEEEGPCSNIKAYPSLTLGPEQDSRSSQSAGVSSFSNSSSSIKRERDEEFLLDLDEEENKKNGNPRKKLRLTKQQSALLEDSFIHHSTLNPKQKQELAKKLNLRARQVEVWFQNRRARTKLKQTEAECEILKKWCERLREENKRLQKELQHLKSMKTNNK* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2945 192 Coils Coil 153 190 - -
Amo17g2945 192 MobiDBLite consensus disorder prediction 25 39 - -
Amo17g2945 192 ProSitePatterns 'Homeobox' domain signature. 129 152 IPR017970 GO:0000981|GO:0006355
Amo17g2945 192 SMART halz 154 192 IPR003106 GO:0006355|GO:0043565
Amo17g2945 192 MobiDBLite consensus disorder prediction 51 72 - -
Amo17g2945 192 SUPERFAMILY Homeodomain-like 95 162 IPR009057 -
Amo17g2945 192 PANTHER - 60 189 - -
Amo17g2945 192 PANTHER - 3 54 - -
Amo17g2945 192 Gene3D - 102 152 - -
Amo17g2945 192 CDD homeodomain 97 155 IPR001356 GO:0003677
Amo17g2945 192 Pfam Homeobox associated leucine zipper 154 188 IPR003106 GO:0006355|GO:0043565
Amo17g2945 192 ProSiteProfiles 'Homeobox' domain profile. 94 154 IPR001356 GO:0003677
Amo17g2945 192 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 60 189 - -
Amo17g2945 192 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 3 54 - -
Amo17g2945 192 MobiDBLite consensus disorder prediction 25 73 - -
Amo17g2945 192 Pfam Homeodomain 98 152 IPR001356 GO:0003677
Amo17g2945 192 SMART HOX_1 96 158 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2945 Amo-Chr17 131740765 131742005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2945 3 188 Homeobox Transcription Factor Family AT2G22800 49.010 2.48e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo17g2945 Homeodomain 3.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2945 K09338 - gmx:100790927 175.637