Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2935 ATGGGTATCTGCATATCCGCTGAATCTTCAGAGATTCATCACGAATCATCTAACTTAGCTACTGAAGAGAATGTAACAGTGTATGAATCTAGCAAGAATGTTAATTTAAGTAAGATTCACAGACTTTCTTCTATTCACTCTAAAAAGGGTAGCAAAGGACTTAACCAAGATGCTGCCACTCTTTGCCAGGGTTATGGAATGGAGGATGCAGCATTTTGCGGTGTTTTTGATGGGCACGGAAGGAATGGTCGCATAGTGAGCCAAATAGTAAACAAGCGTTTGTCTTCACTCATTCTGGACCAAAAGAATATGATAGCTCATGCCAAGASTGATAACAATACCATATTGGAAGATGATGACTCGTGCACAAACAAGAATTTTCAAGAGTGGAAAGAAGCTATTCTTTGTGCTTTCAGGGTGATGGACASGGAGGTGAATCAACTAGAGAATCTAGATTTCTCTTGCAGTGGAACTACAGCTATAGTTGCTATAAGACAGAGTGAAGATCTTATCATGGCTAACCTTGGTGACTCAAGAGCTGTCTTGGGGACAATTTGTGAYGGTGAAATCATTCCCATTCAACTGACCACAGATATGAAGCCTGGATTACCTCGTGAAGCAGATAGAATAAGAAGTTGTAATGGTCGTGTATTTGCTCTACATGAGGAACCACACATCCAAAGAGTGTGGTTACCCAATGAGAACTCCCCAGGCCTAGCCATGTCTCGTGCTTTTGGAGATTTCATTCTTAAGGACCACGGTATCATTGCTATTCCGGAGATTTCGTTTCGCCCTCTAACATCAAGTGACCAATTTGTTGTGCTTGCAAGTGATGGGGTGTGGGATGTRCTAAGCAACATCGAGGTTTGCTCGATCGTGTGGAYGACAGAGAATGAAGCAGCGGCAGCTAAGGCAGTGGTGGAAGCAGCTACAGCTGCATGGAAAAGCAAATATCCTTCCTCCAAGGTAGACGACTGCACCGCAGTTTGCCTCTTCCTGCAGAAGAAACAAAGGAGCCTAGTATATGTAAAAACTGGAAATAATGTTAACTAA 1053 0.4245 MGICISAESSEIHHESSNLATEENVTVYESSKNVNLSKIHRLSSIHSKKGSKGLNQDAATLCQGYGMEDAAFCGVFDGHGRNGRIVSQIVNKRLSSLILDQKNMIAHAKXDNNTILEDDDSCTNKNFQEWKEAILCAFRVMDXEVNQLENLDFSCSGTTAIVAIRQSEDLIMANLGDSRAVLGTICDGEIIPIQLTTDMKPGLPREADRIRSCNGRVFALHEEPHIQRVWLPNENSPGLAMSRAFGDFILKDHGIIAIPEISFRPLTSSDQFVVLASDGVWDVLSNIEVCSIVWXTENEAAAAKAVVEAATAAWKSKYPSSKVDDCTAVCLFLQKKQRSLVYVKTGNNVN* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2935 350 SMART PP2C_4 32 331 IPR001932 -
Amo17g2935 350 PANTHER PROTEIN PHOSPHATASE 2C 72-RELATED 1 338 - -
Amo17g2935 350 Pfam Protein phosphatase 2C 64 311 IPR001932 -
Amo17g2935 350 ProSiteProfiles PPM-type phosphatase domain profile. 42 333 IPR001932 -
Amo17g2935 350 PANTHER ALPHABET, ISOFORM E-RELATED 1 338 - -
Amo17g2935 350 CDD PP2Cc 41 298 IPR001932 -
Amo17g2935 350 Gene3D - 24 337 IPR036457 -
Amo17g2935 350 SUPERFAMILY PP2C-like 35 334 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2935 Amo-Chr17 131560374 131562631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2935 1 338 PP2C-type Phosphatase Gene Family AT5G26010 51.613 3.99e-106 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2935 - - gmx:100795893 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0895 08 15275190 15276929 Amo17g2935 17 131560374 131562631 hybridization
Amo16g4085 16 153318921 153322431 Amo17g2935 17 131560374 131562631 PCT
Amo17g2935 17 131560374 131562631 Amo16g4085 16 153318921 153322431 PCT